1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tattggaaattttaaatggttcatgaatgaattcactacccaagaacaaagcttgtccagtaatgacattatctattggctcgatttatgtttggtccagTGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGATTGGCCAACCTGTGGGGTTTCAGATCGACATAA
species | Oryza sativa |
transcript | LOC_Os07g48820.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGGTGCCTTGCCGAGATTTCCCCCAACCGCCACCGACGATCGTTCACT TGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGAEST: gi|88304837|gb|CI671083.1|CI671083
genomic: GCCGGTGCCTTGCCGAGATTTCCCCCAACCGCCACCGACGATCGTTCACTgtatgcatgc ... tttggtccagTGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGA
EST: GCCGGTGCCTTGCCGAGATTTCCCCCAACCGCCACCGACGATCGTTCACT TGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGAEST: gi|88468882|gb|CI696885.1|CI696885
genomic: GCCGGTGCCTTGCCGAGATTTCCCCCAACCGCCACCGACGATCGTTCACTgtatgcatgc ... tttggtccagTGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGA
EST: GCCGGTGCCTTGCCGAGATTTCCCCCAACCGCCACCGACGATCGTTCACT TGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGAEST: gi|29639367|gb|CB644376.1|CB644376
genomic: GCCGGTGCCTTGCCGAGATTTCCCCCAACCGCCACCGACGATCGTTCACTgtatgcatgc ... tttggtccagTGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGA
EST: GCCGGTGCCTTGCCGAGATTTCCCCCAACCGCCACCGACGATCGTTCACT TGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGA
genomic: GCCGGTGCCTTGCCGAGATTTCCCCCAACCGCCACCGACGATCGTTCACTgtatgcatgc ... tttggtccagTGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGA
acaaagcttgtccagtaatgacattatctattggctcgatttatgtttggtccagTGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGATTGGCCAACCTGTGGGGTTTCAGATCGACATAA
attatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattggaaattttaaatggttcatgaatgaattcactacccaagaacaaagcttgtccagtaatgacattatctattggctcgatttatgtttggtccagTGGCACAAAGGGGAGTAGCACTGTCCAAGCTGTTGTGGTCCGTCAGGGAGATTGGCCAACCTGTGGGGTTTCAGATCGACATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - -gaacaaa