1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAGGCCGATGTGTTTCATATACTTTCAGGCATGTGGAAGACACCCGCAGAAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAGgtgaccgcagattaaatctcaatattttcttatttgtctgatgcccctttctggtcctgtaatttatactgatttcaccatatggtacaaaatttcag
species | Oryza sativa |
transcript | LOC_Os07g48820.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAG CTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTAEST: gi|66928367|gb|CX115215.1|CX115215
genomic: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAGgtgaccgcag ... aaaatttcagCTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTA
EST: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAG CTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTAEST: gi|29671725|gb|CB668000.1|CB668000
genomic: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAGgtgaccgcag ... aaaatttcagCTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTA
EST: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAG CTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTAEST: gi|87036046|gb|CI189493.1|CI189493
genomic: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAGgtgaccgcag ... aaaatttcagCTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTA
EST: TTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAG CTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTAEST: gi|29639368|gb|CB644377.1|CB644377
genomic: TTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAGgtgaccgcag ... aaaatttcagCTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTA
EST: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAG CTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTAEST: gi|29659082|gb|CB655357.1|CB655357
genomic: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAGgtgaccgcag ... aaaatttcagCTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTA
EST: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAG CTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTA
genomic: AAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAGgtgaccgcag ... aaaatttcagCTCCTAGCAAATCACCTCGAACCTTTAACCGAGCAGCAGTTGCTGGGATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCCGATGTGTTTCATATACTTTCAGGCATGTGGAAGACACCCGCAGAAAGATGCTTCCTGTGGCTTGGTGGTTTCCGTCCATCTGAGCTTCTAAAGgtgaccgcagattaaatctcaatattttcttatttgtctgatgcccctttctggtcctgtaatttatactgatttcaccatatggtacaaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT