1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgcaatgtcatgttttgctgtagcaccctgataacatattgatactatgaatccactgccaaatagtgctctaaatatgctcagttgctcaaacttgcagTTAGAAAACGGACATAGTGGTGCAGTCATGGCTTCTAACTCTTCAGATAGATCTGACAGATCTGACAAACTTATGGACCAAAAG
species | Oryza sativa |
transcript | LOC_Os07g48820.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGGACTGACACATCGATTGTTGTAGACAACGACGACAAAAACCACCAG TTAGAAAACGGACATAGTGGTGCAGTCATGGCTTCTAACTCTTCAGATAGA
genomic: CAAGGACTGACACATCGATTGTTGTAGACAACGACGACAAAAACCACCAGgtaatccttt ... aaacttgcagTTAGAAAACGGACATAGTGGTGCAGTCATGGCTTCTAACTCTTCAGATAGA
tatgaatccactgccaaatagtgctctaaatatgctcagttgctcaaacttgcagTTAGAAAACGGACATAGTGGTGCAGTCATGGCTTCTAACTCTTCAGATAGATCTGACAGATCTGACAAACTTATGGACCAAAAG
ctctaaa putative branch site (score: 17)
tctaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaatgtcatgttttgctgtagcaccctgataacatattgatactatgaatccactgccaaatagtgctctaaatatgctcagttgctcaaacttgcagTTAGAAAACGGACATAGTGGTGCAGTCATGGCTTCTAACTCTTCAGATAGATCTGACAGATCTGACAAACTTATGGACCAAAAG
- - - -tcatgtt
- - - - - - - ttgctgt
- - - - - - - - - - -agcaccc
- - - - - - - - - - - - - - - - - - - -tgatact
- - - - - - - - - - - - - - - - - - - - - - - -tgaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - actgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agttgct