Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTCATCACCTTGAAGGATTTGGCCATGGTATGCACGGAAAATGCCAGCCTCGCTGTGCTTGGTCACGACTATGATCTTCCCACGCTGCGTGCTCTTGgtatttcttattcttgtttatcctctttatctatctcgcattgcttgctgatccatgttgggtcgattgttttatttaatttccag

Basic information

species Oryza sativa
transcript LOC_Os06g51400.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66922036|gb|CX108884.1|CX108884
EST:     CCTCGCTGTGCTTGGTCACGACTATGATCTTCCCACGCTGCGTGCTCTTG                         GGATTGTTTTGCTGGAAACTTTGAAAGAACGACTTAAGGAAACCTCAATTG
genomic: CCTCGCTGTGCTTGGTCACGACTATGATCTTCCCACGCTGCGTGCTCTTGgtatttctta ... taatttccagGGATTGTTTTGCTGGAAACTTTGAAAGAACGACTTAAGGAAACCTCAATTG
EST: gi|5667341|gb|AU077583.1|AU077583
EST:     TGATTTTCCCNACGCTGCGTCCTCTTG                         GNATTGTTTTGCTGG-AACTTTGAAAGAACGACTTAAGGAAACCTCAATTG
genomic: TGATCTTCCC-ACGCTGCGTGCTCTTGgtatttctta ... taatttccagGGATTGTTTTGCTGGAAACTTTGAAAGAACGACTTAAGGAAACCTCAATTG
EST: gi|29614571|gb|CB619584.1|CB619584
EST:     CCTCGCTGTGCTTGGTCACGACTATGATCTTCCCACGCTGCGTGCTCTTG                         GGATTGTTTTGCTGGAAACTTTGAAAGAACGACTTAAGGAAACCTCAATTG
genomic: CCTCGCTGTGCTTGGTCACGACTATGATCTTCCCACGCTGCGTGCTCTTGgtatttctta ... taatttccagGGATTGTTTTGCTGGAAACTTTGAAAGAACGACTTAAGGAAACCTCAATTG