1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtgaaaattacgaggatatgttgcgttaggtattgtacttttactgtacttcgttgtatgattagaaatcgtatttcagtcttgcattttttttttcagCACTCGCACTGTACTTCAGTGTATGAATTGTCATGGATAGTTTTAGCCTTCAATTTGAGCCCTAGGCATGAAGAGATCCTGGCTCCGCCACTGAAGGACG
species | Oryza sativa |
transcript | LOC_Os06g51400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCAGTTCCCCTTTCTCATCCAAAGCTTGATTCCCCAAATCAAATCCAG CACTCGCACTGTACTTCAGTGTATGAATTGTCATGGATAGTTTTAGCCTTCEST: gi|58679405|gb|CK068092.1|CK068092
genomic: TCGCAGTTCCCCTTTCTCATCCAAAGCTTGATTCCCCAAATCAAATCCAGgtcaatcttc ... tttttttcagCACTCGCACTGTACTTCAGTGTATGAATTGTCATGGATAGTTTTAGCCTTC
EST: TCGCAGTTCCCCTTTCTCATCCAAAGCTTGATTCCCCAAATCAAATCCAG CACTCGCACTGTACTTCAGTGTATGAATTGTCATGGATAGTTTTAGCCTTC
genomic: TCGCAGTTCCCCTTTCTCATCCAAAGCTTGATTCCCCAAATCAAATCCAGgtcaatcttc ... tttttttcagCACTCGCACTGTACTTCAGTGTATGAATTGTCATGGATAGTTTTAGCCTTC
tgtacttcgttgtatgattagaaatcgtatttcagtcttgcattttttttttcagCACTCGCACTGTACTTCAGTGTATGAATTGTCATGGATAGTTTTAGCCTTCAATTTGAGCCCTAGGCATGAAGAGATCCTGGCTCCGCCACTGAAGGACG
tcttgcattttttttt CT-rich tract
ttgcatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgaaaattacgaggatatgttgcgttaggtattgtacttttactgtacttcgttgtatgattagaaatcgtatttcagtcttgcattttttttttcagCACTCGCACTGTACTTCAGTGTATGAATTGTCATGGATAGTTTTAGCCTTCAATTTGAGCCCTAGGCATGAAGAGATCCTGGCTCCGCCACTGAAGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
agtgaaaa
- - - - - - - - - atgttgc
- - - - - - - - - - - - - - - - - - - - tttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgca