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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGTGGCGGGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCGAGCTTgtatgttcctctcttttgccactgcctttcattctttttccggtttctcatctccgattgaggggctgctcaatcgcag

Basic information

species Oryza sativa
transcript LOC_Os06g51400.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2427801|gb|C72264.1|C72264
EST:     GGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCGAGCTT                         GATTTGCTCATCANCTTGAAGGATTTGGCCATGGTATGCACGGAAAATGCC
genomic: GGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCGAGCTTgtatgttcct ... tcaatcgcagGATTTGCTCATCACCTTGAAGGATTTGGCCATGGTATGCACGGAAAATGCC
EST: gi|66922036|gb|CX108884.1|CX108884
EST:     GGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGAACCCGAGCTT                         GATTTGCTCATCACCTTGAAGGATTTGGCCATGGTATGCACGGAAAATGCC
genomic: GGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCGAGCTTgtatgttcct ... tcaatcgcagGATTTGCTCATCACCTTGAAGGATTTGGCCATGGTATGCACGGAAAATGCC
EST: gi|29614571|gb|CB619584.1|CB619584
EST:     GGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCGAGCTT                         GATTTGCTCATCACCTTGAAGGATTTGGCCATGGTATGCACGGAAAATGCC
genomic: GGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCGAGCTTgtatgttcct ... tcaatcgcagGATTTGCTCATCACCTTGAAGGATTTGGCCATGGTATGCACGGAAAATGCC
EST: gi|58679405|gb|CK068092.1|CK068092
EST:     GGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGAGCCCGAGCTT                         GATTTGCTCATCACCTTGAAGGA
genomic: GGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCGAGCTTgtatgttcct ... tcaatcgcagGATTTGCTCATCACCTTGAAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGTGGCGGGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCGAGCTTgtatgttcctctcttttgccactgcctttcattctttttccggtttctcatctccgattgaggggctgctcaatcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT