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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctacgattgaactatttatttatcggtactccactgcttttgatctgtgtttctgtgaacctctttatatatgaatttaattaactttgaatactcagGCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGTGGCGGGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCG

Basic information

species Oryza sativa
transcript LOC_Os06g51400.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2427801|gb|C72264.1|C72264
EST:     CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAG                         GCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
genomic: CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAGgtgaaaagtt ... gaatactcagGCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
EST: gi|66922036|gb|CX108884.1|CX108884
EST:     CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAG                         GCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
genomic: CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAGgtgaaaagtt ... gaatactcagGCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
EST: gi|58604728|gb|CK015256.1|CK015256
EST:     CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAG                         GCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
genomic: CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAGgtgaaaagtt ... gaatactcagGCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
EST: gi|29614571|gb|CB619584.1|CB619584
EST:     CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAG                         GCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
genomic: CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAGgtgaaaagtt ... gaatactcagGCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
EST: gi|58679405|gb|CK068092.1|CK068092
EST:     CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAG                         GCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT
genomic: CAGCAGACCGTGACCACAGCAGCTCAGGCTCAGCCTCAACCTCAGCTCAGgtgaaaagtt ... gaatactcagGCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgtttctgtgaacctctttatatatgaatttaattaactttgaatactcagGCTAAAAAACCTGCGTCTACCAACGCTGAAGAGCCATCATCTCCTACTCGTGGCGGGCAGCAACAAGACTCACGACGGCTCCGGACCCTCTCCGACCCCG
                                   aattaac  putative branch site (score: 2)
                  tctttatatatgaatt  TA-rich tract