1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag
species | Oryza sativa |
transcript | LOC_Os06g45820.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29628598|gb|CB633609.1|CB633609
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|2798681|gb|AA751975.1|AA751975
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGANCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTEST: gi|11442703|gb|BF430606.1|BF430606
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCT
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|58590905|gb|CF989213.1|CF989213
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: GCAAAAGTC-TGTTGCTTACCATGAAGTTGGGCATGC-ATATGTGG AACTTTGACGCGCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAEST: gi|29613927|gb|CB618940.1|CB618940
genomic: GCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGC-CTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGA
EST: GGGCATGCAATTTGTGG AACTTTGACGCCTGGCCAGGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|58609858|gb|CK037891.1|CK037891
genomic: GGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|14713849|gb|AU197811.1|AU197811
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|11442742|gb|BF430645.1|BF430645
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29636881|gb|CB641890.1|CB641890
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|58681961|gb|CK070648.1|CK070648
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAAEST: gi|58607022|gb|CK035055.1|CK035055
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCEST: gi|29628517|gb|CB633528.1|CB633528
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGC
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|2428427|gb|C72890.1|C72890
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG A-CTTTGACGCCTNGCCACGACCCCTGTCCAAAAGGT-ACTTTGATCCCGAEST: gi|29662978|gb|CB659253.1|CB659253
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCC-TGTCCAAAAGGTTACTTTGATCCCGA
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|58608103|gb|CK036136.1|CK036136
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29613925|gb|CB618938.1|CB618938
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: ACCATGAAGTTGGGCATGCAATTTGTGG AACTTGGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29627170|gb|CB632181.1|CB632181
genomic: ACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29617927|gb|CB622939.1|CB622939
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29687052|gb|CB683327.1|CB683327
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: GTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTAC-TTGTATCCCGAEST: gi|58693754|gb|CK082441.1|CK082441
genomic: GTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTG-ATCCCGA
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGANEST: gi|29658816|gb|CB655091.1|CB655091
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: TGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|58607614|gb|CK035647.1|CK035647
genomic: TGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAGAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|58608816|gb|CK036849.1|CK036849
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGEST: gi|29673467|gb|CB669742.1|CB669742
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29673465|gb|CB669740.1|CB669740
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29622525|gb|CB627536.1|CB627536
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|58691348|gb|CK080035.1|CK080035
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|38480400|gb|CF964489.1|CF964489
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTC-TGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGAGCCGTGTCCAAAAGGTTACTTTGATCCCGAEST: gi|29627091|gb|CB632102.1|CB632102
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGA-CCCTGTCCAAAAGGTTACTTTGATCCCGA
EST: GGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|33796340|gb|CF324037.1|CF324037
genomic: GGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|58693479|gb|CK082166.1|CK082166
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAGEST: gi|29629665|gb|CB634674.1|CB634674
genomic: AAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
EST: AGTTGGGCATGCAATTTGTGG AACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
genomic: AGTTGGGCATGCAATTTGTGGgtaagagata ... ttctttgtagAACTTTGACGCCTGGCCACGACCCTGTCCAAAAGGTTACTTTGATCCCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag
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