1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagtttcagatggaacccaacactggtgttacatttgatgatgttgctggtgtcgatgaagcaaagcaagacttcatggaagtggttgagttcttgaagAAACCAGAAAGGTTCACCGCTGTTGGTGCTCGCATCCCTAAGGGTGTTCTGCTTGTTGGTCCTCCTGGAACTGGTAAGACTTTGCTTGCCAAGGCTATTG
species | Oryza sativa |
transcript | LOC_Os06g45820.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCTTACTCGAGGTTCCTTGAGTATCTAGACGAGGACAGAGTGAAGAA- A--CCAGAAAGGTTCACCGCTGTTGGTGCTCGCATCCCTNAGGGTGTTCTG
genomic: TGTCTTACTCGAGGTTCCTTGAGTATCTAGACAAGGACAGAGTGAAGAAGgttgatttgt ... gttcttgaagAAACCAGAAAGGTTCACCGCTGTTGGTGCTCGCATCCCTAAGGGTGTTCTG
tgctggtgtcgatgaagcaaagcaagacttcatggaagtggttgagttcttgaagAAACCAGAAAGGTTCACCGCTGTTGGTGCTCGCATCCCTAAGGGTGTTCTGCTTGTTGGTCCTCCTGGAACTGGTAAGACTTTGCTTGCCAAGGCTATTG
ttctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagtttcagatggaacccaacactggtgttacatttgatgatgttgctggtgtcgatgaagcaaagcaagacttcatggaagtggttgagttcttgaagAAACCAGAAAGGTTCACCGCTGTTGGTGCTCGCATCCCTAAGGGTGTTCTGCTTGTTGGTCCTCCTGGAACTGGTAAGACTTTGCTTGCCAAGGCTATTG
- - - - - - - aacccaa
- - - - - - - - - - - -ctggtgt
- - - - - - - - - - - - - - - - - -ttgatga
- - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg