1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagacaaaactgcattttgatgtcttaatttcaatatcatacttattatgcattaagtttgattgctgctattaatctgaaacgtccttatatttaattagtactaacttatgatgttgcgttgcagACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGTGCAGCTGTTTTGACATCAGTACTTACATTGATTGATGAATATGATTTGT
species | Oryza sativa |
transcript | LOC_Os06g43630.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTGAAGGCGTTTGGTGAGTGCCGACCACTGAGGGAGCTTGCTAATCTA ACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGTEST: gi|58664288|gb|CK052974.1|CK052974
genomic: TTGTGAAGGCGTTTGGTGAGTGCCGACCACTGAGGGAGCTTGCTAATCTAgtaagacaaa ... tgcgttgcagACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGT
EST: TTGTGAAGGCGTTTGGTGAGTGCCGACCACTGAGGGAGCTTGCTAATCTA ACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGTEST: gi|2309702|gb|C25857.1|C25857
genomic: TTGTGAAGGCGTTTGGTGAGTGCCGACCACTGAGGGAGCTTGCTAATCTAgtaagacaaa ... tgcgttgcagACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGT
EST: TTGTGAAGGCGTTTGGTGAGTGCCGACCACTGAGGGAGCTTGCTAATCTA ACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGT
genomic: TTGTGAAGGCGTTTGGTGAGTGCCGACCACTGAGGGAGCTTGCTAATCTAgtaagacaaa ... tgcgttgcagACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGT
taatctgaaacgtccttatatttaattagtactaacttatgatgttgcgttgcagACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGTGCAGCTGTTTTGACATCAGTACTTACATTGATTGATGAATATGATTTGT
tactaac putative branch site (score: 27)
ttatatttaattagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaaaactgcattttgatgtcttaatttcaatatcatacttattatgcattaagtttgattgctgctattaatctgaaacgtccttatatttaattagtactaacttatgatgttgcgttgcagACATTGATAATGGGAAACCGTGAGGCTATTTCCAAGATGCATAATATGAGTGCAGCTGTTTTGACATCAGTACTTACATTGATTGATGAATATGATTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT