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...ctcatgggcttgttaaatagttttttatattcaattcccatttgcacctagcctagcagcatatatgtgtgctctccatgttgacaaaattctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTTGGTGAAACTGGTGATTCAGATTACGAAGAATTGTTTGGAGGTCTTCAT
species | Oryza sativa |
transcript | LOC_Os06g43630.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACCAGACTATCTGTAATTCCGATCCACGCATCACGGTCTAAGGCTCTAAG GTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTEST: gi|58684428|gb|CK073115.1|CK073115
genomic: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
EST: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAG GTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTEST: gi|27576514|gb|CA999208.1|CA999208
genomic: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
EST: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAG GTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTEST: gi|163928456|gb|EG715436.1|EG715436
genomic: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
EST: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAG GTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTEST: gi|25799628|gb|CA755589.1|CA755589
genomic: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
EST: GGTCTAAGGCTCTAAG GTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTEST: gi|88314082|gb|CI600084.1|CI600084
genomic: GGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
EST: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAG GTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTEST: gi|29630588|gb|CB635597.1|CB635597
genomic: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
EST: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAG GTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTEST: gi|58661565|gb|CK050245.1|CK050245
genomic: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
EST: ACCAGAATATCTGTAATTCCAATCCACGCATCACGGTCTAAAGCTCTAAG GTACTTATCTGTTCGCTGGGGCATATAGTTGCAAAATGTGGTGGTTCTTGTEST: gi|29636933|gb|CB641942.1|CB641942
genomic: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
EST: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAG GTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
genomic: ACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGCTCTAAGgtttgtttga ... tctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGT
acctagcctagcagcatatatgtgtgctctccatgttgacaaaattctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTTGGTGAAACTGGTGATTCAGATTACGAAGAATTGTTTGGAGGTCTTCAT
tgttgac putative branch site (score: 7)
ttctgttct putative PPT
atatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcatgggcttgttaaatagttttttatattcaattcccatttgcacctagcctagcagcatatatgtgtgctctccatgttgacaaaattctgttctagGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTTGGTGAAACTGGTGATTCAGATTACGAAGAATTGTTTGGAGGTCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- catgggc
- - - - - - - - - - - - - - - - - - - catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga