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...tattttgcactttgatatatgatgaaatttgcaggtttgttggtatgtatgttcacatgtattggccttataattcctttatgatgtattaatactgcagCCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGATACTGGCGGACAG
species | Oryza sativa |
transcript | LOC_Os06g43630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACACACCTAGGATCAGTTCAGTTGACAAGCTGTACATAGTGTTGATCAG CCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGAEST: gi|29644244|gb|CB649251.1|CB649251
genomic: AACACACCTAGGATCAGTTCAGTTGACAAGCTGTACATAGTGTTGATCAGgtacacagta ... aatactgcagCCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGA
EST: AACACACCTAGGATCAGTTCAGTTGACAAGCTGTACATAGTGTTGATCAG CCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGAEST: gi|29633890|gb|CB638899.1|CB638899
genomic: AACACACCTAGGATCAGTTCAGTTGACAAGCTGTACATAGTGTTGATCAGgtacacagta ... aatactgcagCCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGA
EST: AACACACCTAGGATCAGTTCAGTTGACAAGCTGTACATAGTGTTGATCAG CCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGA
genomic: AACACACCTAGGATCAGTTCAGTTGACAAGCTGTACATAGTGTTGATCAGgtacacagta ... aatactgcagCCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGA
tgtatgttcacatgtattggccttataattcctttatgatgtattaatactgcagCCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGATACTGGCGGACAG
tattaat putative branch site (score: 13)
ttataattcctttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttgcactttgatatatgatgaaatttgcaggtttgttggtatgtatgttcacatgtattggccttataattcctttatgatgtattaatactgcagCCTTCATGGCCTGGTCCGTGGTGAGAACATGGAGCTTGGCCGTGATTCAGATACTGGCGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- ttttgca
- - - - - - - - - -tgatgaa
- - - - - - - - - - - - - atttgca
- - - - - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat