1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtatacttatgcatcataatcttttcttttttcactccgaaaatagtcaatggtaactactgcacaattattttcataattgggtaatttgctgttataatctgctgtagaggtttaatgtgcattagttccctgttccttgttctgcagATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATGGATGGTGAGGAAGACGGTCCATCCCCAGCCTCTGAAGATCCATCTATTT
species | Oryza sativa |
transcript | LOC_Os06g43630.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGTCAAGCGTGGTGCTAACTGCTATGGTCGCTATATGCCTCGTATGGTT ATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATGEST: gi|29630587|gb|CB635596.1|CB635596
genomic: GAGTCAAGCGTGGTGCTAACTGCTATGGTCGCTATATGCCTCGTATGGTTgtgagtatac ... tgttctgcagATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATG
EST: GAGTCAAGCGTGGTGCTAACTGCTATGGTCGCTATATGCCTCGTATGGTT ATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATGEST: gi|2309702|gb|C25857.1|C25857
genomic: GAGTCAAGCGTGGTGCTAACTGCTATGGTCGCTATATGCCTCGTATGGTTgtgagtatac ... tgttctgcagATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATG
EST: AGCGTGGTGCTAACTGCTATGGTCGCTATATGCCTCGTATGGTT ATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATG
genomic: AGCGTGGTGCTAACTGCTATGGTCGCTATATGCCTCGTATGGTTgtgagtatac ... tgttctgcagATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATG
tataatctgctgtagaggtttaatgtgcattagttccctgttccttgttctgcagATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATGGATGGTGAGGAAGACGGTCCATCCCCAGCCTCTGAAGATCCATCTATTT
gtttaat putative branch site (score: 22)
ttccctgttccttgtt putative PPT
tttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatacttatgcatcataatcttttcttttttcactccgaaaatagtcaatggtaactactgcacaattattttcataattgggtaatttgctgttataatctgctgtagaggtttaatgtgcattagttccctgttccttgttctgcagATCATTCCCCCAGGTGTTGAATTTGGCCATATGATTCATGACTTCGATATGGATGGTGAGGAAGACGGTCCATCCCCAGCCTCTGAAGATCCATCTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA