1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAACAGTGTGGTTGTTGGCCCTCACATAAGAGGTAGCCGTTTACGATCAACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAGgtgaatatcttctttccttgtaagaaaccctctttacagccatggctctgagttgcttgcaccccaagcattccattacaaggaaaagtttcctcatgttgcacttcatcccaaagtaggagggttaccaatcaggtgtcttactctttttttgtgttgacacttgacag
species | Oryza sativa |
transcript | LOC_Os02g57660.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAG GCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCCEST: gi|33682502|gb|CF310741.1|CF310741
genomic: ACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAGgtgaatatct ... cacttgacagGCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCC
EST: ACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAG GCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCCEST: gi|25800299|gb|CA756260.1|CA756260
genomic: ACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAGgtgaatatct ... cacttgacagGCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCC
EST: ACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAG GCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCCEST: gi|88836024|gb|CI371129.1|CI371129
genomic: ACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAGgtgaatatct ... cacttgacagGCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCC
EST: ACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAG GCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCC
genomic: ACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAGgtgaatatct ... cacttgacagGCTGCAGATCCAGCTAGGGGTTAACATGCCTGCAAGGGCAGAGCAGAACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACAGTGTGGTTGTTGGCCCTCACATAAGAGGTAGCCGTTTACGATCAACAGCCGCTGGATTTGCGGAAGTAGATCTACTACTTCCTGGTACAGCCAGgtgaatatcttctttccttgtaagaaaccctctttacagccatggctctgagttgcttgcaccccaagcattccattacaaggaaaagtttcctcatgttgcacttcatcccaaagtaggagggttaccaatcaggtgtcttactctttttttgtgttgacacttgacag
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