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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaccaccaaccacgcctcctcctcctgctgcagtttgaattgaatccctcactgacttctgtctgtgttgtgctctatcgaatttgccttctcatgattcatccattggttgatttgatcggatgatgatacccatcacccaaagCGA

Basic information

species Oryza sativa
transcript LOC_Os02g57660.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88730771|gb|CI754384.1|CI754384
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88695413|gb|CI737916.1|CI737916
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88718434|gb|CI741944.1|CI741944
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88724145|gb|CI749155.1|CI749155
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88313018|gb|CI592302.1|CI592302
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88743243|gb|CI766751.1|CI766751
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88336854|gb|CI626934.1|CI626934
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88723285|gb|CI746795.1|CI746795
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88695521|gb|CI737559.1|CI737559
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88357069|gb|CI615956.1|CI615956
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88361384|gb|CI626488.1|CI626488
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88367742|gb|CI570481.1|CI570481
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88385952|gb|CI568620.1|CI568620
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88298956|gb|CI567959.1|CI567959
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88760304|gb|CI769860.1|CI769860
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88317267|gb|CI626910.1|CI626910
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88723551|gb|CI747061.1|CI747061
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88412816|gb|CI576080.1|CI576080
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88403248|gb|CI570989.1|CI570989
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88352184|gb|CI613835.1|CI613835
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88718054|gb|CI741564.1|CI741564
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA
EST: gi|88741890|gb|CI764395.1|CI764395
EST:     CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGG                         -G-
genomic: CGTCGCCGTCGTCGAGTTCGTCTCGCAATCGCCTCCTCCTCTCCCCCTGGgtacgtacca ... tcacccaaagCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatgattcatccattggttgatttgatcggatgatgatacccatcacccaaagCGA
                      atttgat  putative branch site (score: 5)
                   ttgattt  TA-rich tract