1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACTTAGGGAGTTATCTTCTCCAGGAAAGAGTGGAAGTGTCTTTTTCCTATCACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAGgttctgttttatgcttaaattttcagagatcatataagcgtgctagaaaattctttaatggtagattcttcgataaattatacattataagtaacaccacctacttagcaagcggaagttaaaaacatttcatgactctatatgatccttgcag
species | Oryza sativa |
transcript | LOC_Os02g57660.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAG GTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAGEST: gi|58608242|gb|CK036275.1|CK036275
genomic: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAGgttctgtttt ... atccttgcagGTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAG
EST: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAG GTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAGEST: gi|58612782|gb|CK040494.1|CK040494
genomic: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAGgttctgtttt ... atccttgcagGTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAG
EST: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAG GTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAGEST: gi|58660707|gb|CK049387.1|CK049387
genomic: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAGgttctgtttt ... atccttgcagGTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAG
EST: CACAAGATGATCGATTCGTGATCAAGACTCTTCGGAAATCTGAAGTCCAG GTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAGEST: gi|58688826|gb|CK077513.1|CK077513
genomic: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAGgttctgtttt ... atccttgcagGTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAG
EST: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAG GTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAG
genomic: CACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAGgttctgtttt ... atccttgcagGTTCTTTTACGAATGCTTCCAAAATATTACCATCATGTCCGTACTTATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTAGGGAGTTATCTTCTCCAGGAAAGAGTGGAAGTGTCTTTTTCCTATCACAAGATGATCGATTCATGATCAAGACTCTTCGGAAATCTGAAGTCCAGgttctgttttatgcttaaattttcagagatcatataagcgtgctagaaaattctttaatggtagattcttcgataaattatacattataagtaacaccacctacttagcaagcggaagttaaaaacatttcatgactctatatgatccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG