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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTGACAAAATCGAAATTGATGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatattttctcatgcaattatcattctaagatatggtttgttgtgtaactgcattatacttgctgccaaatcaacatatctttttgttctaaatt...

Basic information

species Oryza sativa
transcript LOC_Os02g57660.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57660.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G374973_T01 (Zea mays), 5'ss of exon 6
CTACTGACAAAATCGAAATTGATGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatattttctcatgcaattatcattctaagatatggtttgttgtgtaactgcattatacttgctgccaaatcaacatatctttttgttctaaatt
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||  |||||||    ||| ||  |||| |  | || | |||| |||     ||||| |||   |  || || |   |    | || |||      
CTACTGACAAAATTGAAATTGACGAGAACACAACTCTGAAGGATTTGGATCTTAATTATTCCTTTTATCTTGAACCTTCCTGGCGTGAGGCTCTACTGAAgtgagcacgttttctctaaaaatcatgtttctta--tgtgttctgttatgtggtcacattacactca-tctcagat-actgttcactgttcttcag----

upper sequence: LOC_Os02g57660.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G050309_T01 (Zea mays), 5'ss of exon 6
CTACTGACAAAATCGAAATTGATGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatattttctcatgcaattatcattctaagatatggtttgttgtgtaactgcattatacttgctgccaaatcaacatatctttttgttctaaatt
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||  | ||| ||  ||     || || | |||| ||| ||  ||||| ||||  |  ||||  |   |   || || |||      
CTACTGATAAAATTGAAATTGACGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCCTTTTATCTTGAACCTTCCTGGCGTGAGGCTCTTCTTAAgtgagcatattttctctagaaatgatgttt-----atgtgttctgttatgtgacgacattacactta-tctcaaaatactgttgattattcttcag----

upper sequence: LOC_Os02g57660.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA10G06800.1 (Glycine max), 5'ss of exon 6
CTACTGACAAAATCGAAATTGATGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatattttctcatgcaattatcattctaagatatggtttgttgtgtaactgcattatacttgctgccaaatcaacatatctttttgttctaaatt----------
|| | ||||| || ||||||||||| ||||| ||||| || ||||||||||| ||||| |  |||||  | ||||| || ||||  ||| ||||| | |||| ||    | ||  ||   || |||  |  |      || |||    | |  ||   |  |  ||| ||  | |  || | || || ||  |   |||           
CTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCAGGAGTCTTTATTGAAgtaag-gggtatttaca---aaatattttctt------tgattttgcattttcctttctgttttttgttgttataaaaataaattttattactgagaatataaagaaaaa

upper sequence: LOC_Os02g57660.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 6
CTACTGACAAAATCGAAATTGATGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatattttct---catgcaattatcattctaagatatggtttgttgtgtaactgcattatacttgctgccaaatcaacatatctttttgttctaaatt
|| | ||||| || ||||||||||| ||||| ||||| || ||||||||||| ||||| |  |||||  | ||||| || ||||| ||| ||||| | |||| ||  |||||||     ||    ||    |||| |    |    | |||| | |||     ||||     |        | | ||   | | |  | |   
CTTCGGACAAGATAGAAATTGATGAAAACACCACTCTTAAAGATTTGGATCTGAACTACTGCTTTTACTTGGAACCATCTTGGCGGGAGTCTTTATTGAAgtaaggttattttcaaaatattttctttctgttcttattgttataattttgtattactaataaatacaaatagaagggcagataaattactctttgttga---

upper sequence: LOC_Os02g57660.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 5
CTACTGACAAAATCGAAATTGATGAGAACACAACTCTGAAGGATTTGGATCTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatattttctcatgcaattatcattctaagatatg-gtttgttgtgtaact-gcattatacttgctgccaaatcaacatatctttttgttctaaatt
|| | |||||  | |||||||||||||||||||| ||||| ||| ||||||| || ||    |||||| | |||||||| |||||||| ||| || | | || ||      ||   | ||  |||||    |   || |   | | || || |  |  |||   | ||       |||||  |        ||    |||  
CTGCAGACAAGGTTGAAATTGATGAGAACACAACACTGAAAGATCTGGATCTAAATTACCGCTTTTATTTGGAACCTTCTTGGCGTGATGCTCTATTGATgtaagtcacagttgataagctgttatctcgttgccatttacatattttctgaagttcacatatcatttatccatcaatcatgaaggtgcaatgccaaaaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66924358|gb|CX111206.1|CX111206
EST:     CTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAA                         GCAGATTGAAACTGACAGTGAATTTCTAAGGACCCAACGGATAATGGATTA
genomic: CTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatat ... ttctcttcagGCAGATTGAAACTGACAGTGAATTTCTAAGGACCCAACGGATAATGGATTA
EST: gi|58688826|gb|CK077513.1|CK077513
EST:     CTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAA                         GCAGATTGAAACTGACAGTGAATTTCTAAGGACCCAACGGATAATGGATTA
genomic: CTTAACTATTCATTTTATCTTGAACCTTCCTGGCGTGAGGCTTTACTTAAgtgagcatat ... ttctcttcagGCAGATTGAAACTGACAGTGAATTTCTAAGGACCCAACGGATAATGGATTA