1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAACTAAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatatatgattctgtgatgggtgtttgcatcactgcaattcttctttaggatgtatcccgtctatataaaagaacctagcttttgtggtggtggt...
species | Oryza sativa |
transcript | LOC_Os02g50860.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGCAGAGGGAAAAGAAGTAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|88222418|gb|CI222374.1|CI222374
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|33815648|gb|CF333675.1|CF333675
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCTCGCCAAGGATGCTTTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|88199914|gb|CI199764.1|CI199764
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: GGAAAAGAAGAAAAAGAAATCACGACAAGGATGCCCTATGAA GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|88227817|gb|CI227297.1|CI227297
genomic: GGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|88264281|gb|CI368055.1|CI368055
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|89198220|gb|CI015609.1|CI015609
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|7134953|gb|AU082755.1|AU082755
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|86873773|gb|CI341206.1|CI341206
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|15852212|gb|BI805008.1|BI805008
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: CAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|86497574|gb|CI140207.1|CI140207
genomic: CAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|88837303|gb|CI078663.1|CI078663
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|88374261|gb|CI513348.1|CI513348
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|58679076|gb|CK067763.1|CK067763
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATTGAEST: gi|86543716|gb|CI183922.1|CI183922
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCCCTATGAA GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|44676265|gb|CR289699.1|CR289699
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGGAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATTGAEST: gi|87029047|gb|CI351350.1|CI351350
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AGCAGAGGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|86495788|gb|CI138421.1|CI138421
genomic: AGCAGA-GGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|89178465|gb|CI015170.1|CI015170
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|86510693|gb|CI153326.1|CI153326
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGAEST: gi|86543694|gb|CI183900.1|CI183900
genomic: AAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
EST: GGATGCTCTATGAT GAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
genomic: GGATGCTCTATGATgtaagtatat ... acaactgcagGAACATGTTCCGTGGAAGGAAAATGTCATGCTTCAAATCCTGATTGATCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAACTAAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTATGATgtaagtatatatgattctgtgatgggtgtttgcatcactgcaattcttctttaggatgtatcccgtctatataaaagaacctagcttttgtggtggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggtgg