1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaatagtcatagtgaaatggtgtgcccttgctgtagtagtcttaacttcatttgaaccgttaaaattctgcgacttgctgaaattcttactttgttgtatttaaatgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAACTAAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTA
species | Oryza sativa |
transcript | LOC_Os02g50860.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGGTGCTGCTTATTACATTGAGTGCAGGTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|88222418|gb|CI222374.1|CI222374
genomic: TAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|88227817|gb|CI227297.1|CI227297
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|89198220|gb|CI015609.1|CI015609
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|7134953|gb|AU082755.1|AU082755
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATNTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|163928524|gb|EG711409.1|EG711409
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAACCTCCAEST: gi|86497574|gb|CI140207.1|CI140207
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|88837303|gb|CI078663.1|CI078663
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|58679076|gb|CK067763.1|CK067763
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|44676265|gb|CR289699.1|CR289699
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|86495788|gb|CI138421.1|CI138421
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|89178465|gb|CI015170.1|CI015170
genomic: AACAAATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: ATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACTACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAEST: gi|86510693|gb|CI153326.1|CI153326
genomic: ATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
EST: AATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAG AATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
genomic: AATAGGTGCTGCTTATTACATTGAGTGCAGCTCAAAGACACAACAGgtaaaatagt ... tgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCA
taaaattctgcgacttgctgaaattcttactttgttgtatttaaatgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAACTAAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTA
ttcttac putative branch site (score: 26)
tttgttgtatttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatagtcatagtgaaatggtgtgcccttgctgtagtagtcttaacttcatttgaaccgttaaaattctgcgacttgctgaaattcttactttgttgtatttaaatgacgcgcagAATGTCAAAGGTGTGTTTGATGCTGCTATCAAGGTAGTAATCCAGCCTCCAACTAAGCAGAGGGAAAAGAAGAAAAAGAAATCACGACAAGGATGCTCTA
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