1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCCAGCGCCTCCCGGTTCATCAAGTGCGTCACGGTGGGCGACGGCGCCGTGGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACTgtaaagcaaatctttctccttctcattctcttcttttcttttgttttctcctctctctcccccttccctgttgctgtatcaggattttttgggtgcaaaa...
species | Oryza sativa |
transcript | LOC_Os02g50860.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGGCAAGACCTGCATGCTTATCTGCTACACCAGCAACAAGTTCCCCACT GACTACATACCAACTTGTGTTCGACAATTTCAGCGCAAACGTTGTTGTGGAEST: gi|33815307|gb|CF333505.1|CF333505
genomic: TGGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACTgtaaagcaaa ... gatttggcagGACTACATACCAAC-GGTGTTCGACAATTTCAGCGCAAACGTTGTTGTGGA
EST: TGGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACT GACTACATACCAACGGTGTTCGACAATTTCAGCGCAAACGTTGTTGTGGACEST: gi|163928524|gb|EG711409.1|EG711409
genomic: TGGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACTgtaaagcaaa ... gatttggcagGACTACATACCAACGGTGTTCGACAATTTCAGCGCAAACGTTGTTGTGGAC
EST: TGCTACACCAGCAACAAGTTCCCCACT GACTACATACCAACGGTGTTCGACAATTTCAGCGCAAACGTTGTTGTGGACEST: gi|33815650|gb|CF333676.1|CF333676
genomic: TGCTACACCAGCAACAAGTTCCCCACTgtaaagcaaa ... gatttggcagGACTACATACCAACGGTGTTCGACAATTTCAGCGCAAACGTTGTTGTGGAC
EST: TGGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACT GACTACATACCAACGGTGTTCGACAATTTCAGCGCAAACGTTGTTGTGGAC
genomic: TGGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACTgtaaagcaaa ... gatttggcagGACTACATACCAACGGTGTTCGACAATTTCAGCGCAAACGTTGTTGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCAGCGCCTCCCGGTTCATCAAGTGCGTCACGGTGGGCGACGGCGCCGTGGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACTgtaaagcaaatctttctccttctcattctcttcttttcttttgttttctcctctctctcccccttccctgttgctgtatcaggattttttgggtgcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc