1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTGGCACAAAATTGGgtgagttttgttgacaagaaaaacatttgtttcaattaaactgcatgtcgatgattagaaatgggaattggggctgtagtatgatatacatctaatcacc...
species | Oryza sativa |
transcript | LOC_Os02g50860.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTGGCACAAAATTGG ATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTGEST: gi|163928524|gb|EG711409.1|EG711409
genomic: ACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTGGCACAAAATTGGgtgagttttg ... tggcttacagATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTG
EST: ACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTGGCACAAAATTGG ATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTGEST: gi|86497574|gb|CI140207.1|CI140207
genomic: ACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTGGCACAAAATTGGgtgagttttg ... tggcttacagATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTG
EST: CGTGCCCATTGTGTTGGTTGGCACAAAATTGG ATCTCCGTGAAGACCAAGCACTACTTGTTGGACCATCCTGGCATGATACCTEST: gi|33815650|gb|CF333676.1|CF333676
genomic: CGTGCCCATTGTGTTGGTTGGCACAAAATTGGgtgagttttg ... tggcttacagATCTCCGTGAAGA-CAAGCACTACTTGTTGGACCATCCTGGCATGATACCT
EST: CAGCATTATGCACCCGGCGTGCCCATTGTGTTGGGTTGGCACAAAATTGG ATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTGEST: gi|86495788|gb|CI138421.1|CI138421
genomic: CAGCATTATGCACCCGGCGTGCCCATTGTGTTGG-TTGGCACAAAATTGGgtgagttttg ... tggcttacagATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTG
EST: ACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTGGCACAAAATTGG ATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTG
genomic: ACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTGGCACAAAATTGGgtgagttttg ... tggcttacagATCTCCGTGAAGACAAGCACTACTTGTTGGACCATCCTGGCATGATACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTGGCACAAAATTGGgtgagttttgttgacaagaaaaacatttgtttcaattaaactgcatgtcgatgattagaaatgggaattggggctgtagtatgatatacatctaatcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggctg