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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatcttgtttgacatgtttacatgctatggattatcttgtatagcctgctatggcttattttgtatcacctgcctaatctttgtgctggtatcatgttatag

Basic information

species Oryza sativa
transcript LOC_Os02g08300.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88976735|gb|CI257507.1|CI257507
EST:     TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG                         CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
genomic: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: gi|66923978|gb|CX110826.1|CX110826
EST:     TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG                         CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
genomic: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: gi|88980844|gb|CI022534.1|CI022534
EST:     GGGAAATGGTTCATACTAACCCACAAATATTGCAG                         CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
genomic: GGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: gi|58676620|gb|CK065307.1|CK065307
EST:     TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG                         CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
genomic: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: gi|88966384|gb|CI119519.1|CI119519
EST:     ACCCACAAATATTGCAG                         CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
genomic: ACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: gi|88991630|gb|CI019808.1|CI019808
EST:     TCGGGAAATGGTTCATACTAACCCACAAATATTGCAG                         CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
genomic: TCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT