1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGgttgtcatcctctctgttttgccatataagattatttttgttttttgttcagtataattttcctgagcaaatatttggttttttaatatagtgtttcttg...
species | Oryza sativa |
transcript | LOC_Os02g08300.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTCCTTAGACATAACCAACAG TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGEST: gi|66923978|gb|CX110826.1|CX110826
genomic: TTCCTTAGACATAACCAACAGgttgtcatcc ... tattttgcagTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG
EST: GAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAG TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGEST: gi|58676620|gb|CK065307.1|CK065307
genomic: GAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGgttgtcatcc ... tattttgcagTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG
EST: GAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAG TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG
genomic: GAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGgttgtcatcc ... tattttgcagTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGgttgtcatcctctctgttttgccatataagattatttttgttttttgttcagtataattttcctgagcaaatatttggttttttaatatagtgtttcttg
- - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA