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GGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaacatagttaactcacttattacctcttgttacagaagtatatacagtgtacataacattacataacaacaatgttttgaattattttcatgcttcag
species | Oryza sativa |
transcript | LOC_Os02g08300.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|40486995|gb|BX898244.1|BX898244
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88261283|gb|CI364859.1|CI364859
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATT-GACGG CTTGAAGGCATGGGATTTGACAGAGCACCTGTCATCGAAGCATTCTTCGCCEST: gi|86871825|gb|CI331997.1|CI331997
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88976735|gb|CI257507.1|CI257507
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|89168138|gb|CI109342.1|CI109342
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88276832|gb|CI395995.1|CI395995
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88266856|gb|CI368632.1|CI368632
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACCTGTCATCGAAGCATTCTTCGCCEST: gi|88267177|gb|CI379112.1|CI379112
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|86503859|gb|CI146492.1|CI146492
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: AAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|66923978|gb|CX110826.1|CX110826
genomic: AAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCAEST: gi|88838256|gb|CI373616.1|CI373616
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCA
EST: ATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88831799|gb|CI369481.1|CI369481
genomic: ATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATGTGACAGAGCACGTGTCATCGAACCATTCTTCGCCEST: gi|89178685|gb|CI391683.1|CI391683
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|86490040|gb|CI132673.1|CI132673
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGGTTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88980844|gb|CI022534.1|CI022534
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|58676620|gb|CK065307.1|CK065307
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88975027|gb|CI023278.1|CI023278
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88966384|gb|CI119519.1|CI119519
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|88991630|gb|CI019808.1|CI019808
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|27547445|gb|CA765529.2|CA765529
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGNGTCATCGAAGCATTCTTCGCCEST: gi|86833994|gb|CI340133.1|CI340133
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCEST: gi|86490031|gb|CI132664.1|CI132664
genomic: TTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
EST: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGGTTGGACGG CTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTTTTCGCC
genomic: TGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaa ... catgcttcagCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGgtatgtacaacatagttaactcacttattacctcttgttacagaagtatatacagtgtacataacattacataacaacaatgttttgaattattttcatgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG