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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatgaatgacttttgttattactcttaaaaattaatatagtttgaatatgtggatagaggcaaaaataaaatcatgcactgtgatccttgcaatcacgttatgacagtgcaccattttttttattgggatgctggatgtttttggttctaacatagtgtccatgttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g03060.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g03060.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G174596_T02 (Zea mays), 5'ss of exon 7
TATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatgaatga-----cttttgttattactcttaaaaattaatatagtttgaatatgtggataga-ggcaaaaataaaatcatgcactgtgatccttgcaatcacgttatgacagtgcaccattttttttattgggatgctggatgtttttggttctaacatagtgtccatgttgcag
 ||| |||||||||||| | ||||||| |||||||| ||||||||  | ||||| ||||  ||||||||||||||||||||| |||||||||   || ||  |      ||| |||||| |    |     | |  | || |     | ||  | |  ||     || ||| | ||    ||| ||                                                                                    
AATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTGgtaagcaataaacaagttccttttcgttattgcaaacagtgggtcaagtggtatagggttttgagttgccggtgtggatgaaaacttgtgacgtgttctg----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33675879|gb|CF304118.1|CF304118
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|33688520|gb|CF316759.1|CF316759
EST:     TTGCTTTACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|33676923|gb|CF305162.1|CF305162
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|86427446|gb|CI072543.1|CI072543
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|88832780|gb|CI369670.1|CI369670
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|33678285|gb|CF306524.1|CF306524
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC