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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttaattttcaaatgttattaagtcttcatgttcttccatgtttctgaacaaagacaggaagacctaacactgctctatacattttcatgtgttcatgtcaatgaagTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG

Basic information

species Oryza sativa
transcript LOC_Os02g03060.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g03060.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G174596_T02 (Zea mays), 3'ss of exon 6
gtcttaattttcaaatgttattaagtcttcatgttcttccatgtttctgaacaaagacaggaagacctaacac-tgctctatacattttcatgtgttcatgtcaatgaagTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG
                            || | |  || || || |  |  ||||            |    | || |  ||   ||   ||    |  |  ||||| || ||| |||||||||||| | ||||||| |||||||| ||||||||  | ||||| ||||  ||||||||||||||||||||| |||||
---------------------------gtcttat--ttacaagtgttggttcaaacttcaattagtttgttgcatgttgcatgt-ttgagattctcttctaccaatgcagAATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33688520|gb|CF316759.1|CF316759
EST:     CCACTATTTCCTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAG                         TATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTTACTACC
genomic: CCACTATTTCCTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAGgtcttaattt ... gtcaatgaagTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACC
EST: gi|86427446|gb|CI072543.1|CI072543
EST:     CTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAG                         TATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACC
genomic: CTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAGgtcttaattt ... gtcaatgaagTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACC
EST: gi|88832780|gb|CI369670.1|CI369670
EST:     TAAGATTTTCAG                         TATTAT-GGCACTCCAAATGAAGAAACTTGGGCCAGGTGTTGCTTCACTAC
genomic: TAAGATTTTCAGgtcttaattt ... gtcaatgaagTATTATGGGCACTCCAAATGAAGAAACTT-GGCCAGGTGTTGCTTCACTAC
EST: gi|33678285|gb|CF306524.1|CF306524
EST:     CCACTATTTCCTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAG                         TATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACC
genomic: CCACTATTTCCTGGAGATTCTGAGATTGATGAACTCTTTAAGATTTTCAGgtcttaattt ... gtcaatgaagTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacaggaagacctaacactgctctatacattttcatgtgttcatgtcaatgaagTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG
          acctaac  putative branch site (score: 2)
                        tatacatttt  TA-rich tract