Sequence
atgc intronic sequence ATGC exonic sequence...gcaggcataagtatcaacgaggtcttcttgtgatatacaccttttgcccctccatgtttacatcatttcatctttaacataacccactttggtttgttagGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAA
Basic information
species | Oryza sativa |
transcript | LOC_Os02g03060.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g03060.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G174596_T03 (Zea mays), 3'ss of exon 5
gcaggcataagtatcaacgaggtcttcttgtgatatacaccttttgcccctccatgtttacatcatttcatctttaacataacccactttggtttgttagGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAA----------------------------------
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-------------------------------------------------------------------------------------------------------------------------------------cTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAATGGTGAACCAGAAGGCGCTTTTTCCTGGCGACTC
upper sequence: LOC_Os02g03060.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G174596_T02 (Zea mays), 3'ss of exon 5
gcaggcataagtat-caacgaggtcttcttgtgatatacaccttttgcccctccatgtttacatcatttcatctttaac-ataacccactttggtttgttagGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAA
|| ||||| || | | |||| | | | ||| ||| ||| || ||||| ||| | ||| || |||||||||||| | ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
gctggcatttacatatgatagaactgttacatgatgctccgcatgtgctcctttccttttgagattttgatcatttaattggaactgaacttg--ttattagGTGGTGACGCTTTGGTATAGAGCGCCTGAAATCCTTCTCGGTGCAAGGCATTATTCCACCCCTGTTGATGTGTGGTCAGTTGGTTGCATTTTCGCTGAAA
upper sequence: LOC_Os02g03060.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S25_198V6.6 (Physcomitrella patens), 3'ss of exon 6
gcaggcataagtatcaacgaggtcttcttgtgatatacaccttttgcccctccatgtttacatcatttcatctttaacataacccact--ttggtttgt---tagGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAA
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--gatcttacgattcaa--atgttgttagctgata-acttttttgcatcataaacagctcatttgggtcgtagttcatgggtttcattgtctggcttaaatgcagGTGGTAACATTGTGGTACAGAGCACCAGAAATTCTCTTAGGTTCTCGCCACTACTCTACACCTGTAGATGTGTGGTCTGTAGGATGCATTTTCGCTGAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33678285|gb|CF306524.1|CF306524EST: TTGGGTTGGCCAGGGCATTTGGCATTCCTGTCCGGACATTTACTCACGAG GTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCAT
genomic: TTGGGTTGGCCAGGGCATTTGGCATTCCTGTCCGGACATTTACTCACGAGgtacatttta ... ggtttgttagGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcccctccatgtttacatcatttcatctttaacataacccactttggtttgttagGTGGTGACATTGTGGTATAGAGCACCTGAAATTCTTCTTGGTGCAAGGCATTATTCCACCCCTGTTGACATGTGGTCAGTTGGTTGCATTTTTGCTGAAA
acataac putative branch site (score: 3)
tttaacataa TA-rich tract