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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcatgaatgacttttgttattactcttaaaaattaatatagtttgaatatgtggatagaggcaaaaataaaatcatgcactgtgatccttgcaatcacgttatgacagtgcaccattttttttattgggatgctggatgtttttggttctaacatagtgtccatgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCT

Basic information

species Oryza sativa
transcript LOC_Os02g03060.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33675879|gb|CF304118.1|CF304118
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|33688520|gb|CF316759.1|CF316759
EST:     TTGCTTTACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|33676923|gb|CF305162.1|CF305162
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|86427446|gb|CI072543.1|CI072543
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|88832780|gb|CI369670.1|CI369670
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
EST: gi|33678285|gb|CF306524.1|CF306524
EST:     TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG                         GATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC
genomic: TTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTGgtaaatcatg ... catgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttattgggatgctggatgtttttggttctaacatagtgtccatgttgcagGATCTTGCAACCGTGGTCCCAACACTTGATTCTTCAGGACTCGATCTTCTCTCT
                              ttctaac  putative branch site (score: 1)
                    atgttttt  TA-rich tract