1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtcagccttttttttagctctgttaatatcatgattaaatttatgaagtcttgcataactctaccccgtgtctcatgatatttttttttctggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACTCGATTCAACAAGGACAGGAATACAGTCGACTACAACTATATTGCAGTT
species | Oryza sativa |
transcript | LOC_Os01g73120.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTGTGTTCTTGGCACTCGTGCTGGCCCAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|29668922|gb|CB665197.1|CB665197
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|218501560|gb|FG959366.1|FG959366
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGATCAAGTTGGTTGCAGTGAGAGAGACEST: gi|29661521|gb|CB657796.1|CB657796
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|33654477|gb|CF277091.1|CF277091
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|427638|gb|D23771.1|D23771
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTNTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTNAGAGAGACEST: gi|86853925|gb|CI329371.1|CI329371
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTCCAGTGAGAGAGACEST: gi|3767617|gb|AU031644.1|AU031644
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCCAGCGGTGGAAGGTCCAAGTTGGTTGCAGTGAGAGAGEST: gi|88507528|gb|CI435034.1|CI435034
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATT-CCAGCGGTGGAAGGT-CAAGTTGGTTGCAGTGAGAGAG
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|88521398|gb|CI449081.1|CI449081
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|157651623|gb|EX451257.1|EX451257
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|88268843|gb|CI377747.1|CI377747
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCT-GCCAAAAGGACTGTTGAACCAGAAA- GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|27578313|gb|CB001008.1|CB001008
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|86853877|gb|CI329323.1|CI329323
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAACGGTGGAAGGTCAAATTGGTTGCAGTGAGAGAGACEST: gi|86835917|gb|CI346097.1|CI346097
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|88959711|gb|CI002321.1|CI002321
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|33823206|gb|CF337403.1|CF337403
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACEST: gi|29671029|gb|CB667304.1|CB667304
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
EST: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAG GGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
genomic: CCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGgtatgcttta ... tggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGAC
aagtcttgcataactctaccccgtgtctcatgatatttttttttctggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACTCGATTCAACAAGGACAGGAATACAGTCGACTACAACTATATTGCAGTT
gcataac putative branch site (score: 9)
tatttttttttct putative PPT
tcatgatatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagccttttttttagctctgttaatatcatgattaaatttatgaagtcttgcataactctaccccgtgtctcatgatatttttttttctggaatgcagGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACTCGATTCAACAAGGACAGGAATACAGTCGACTACAACTATATTGCAGTT
- - - - - - - - - tctgtta
- - - - - - - - - - - - - - tcatgat
- - - - - - - - - - - - - - - - - - - - - - - - tcttgca