1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCATGGCCATTTTCATTATTGAGAGGGTTGATGATAGGGCAGGAACAAAGTCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttctccaattgtttaaccatccttcctcagaaatattttctgtacttctttcacaccttccattttgctgccttaactcttatgtag
species | Oryza sativa |
transcript | LOC_Os01g73120.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATEST: gi|218501560|gb|FG959366.1|FG959366
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATEST: gi|29661521|gb|CB657796.1|CB657796
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATEST: gi|29661520|gb|CB657795.1|CB657795
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATEST: gi|29668921|gb|CB665196.1|CB665196
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATEST: gi|27578313|gb|CB001008.1|CB001008
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATEST: gi|218503174|gb|FG945918.1|FG945918
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATEST: gi|29671029|gb|CB667304.1|CB667304
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATAT
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATEST: gi|29671028|gb|CB667303.1|CB667303
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
EST: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAG GTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
genomic: TCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttct ... tcttatgtagGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATGGCCATTTTCATTATTGAGAGGGTTGATGATAGGGCAGGAACAAAGTCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGgcaagcttctccaattgtttaaccatccttcctcagaaatattttctgtacttctttcacaccttccattttgctgccttaactcttatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG