1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aattttgcttatatgttcaataagagggttgcaatgcttgtaatcactacttgatgcactaagtttgcaaaatcatgtggattttttttttgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGGTGTCGTTGGGCTCGTCTTGTGCCATTACAAAAACTACTTCAGGCTAAA
species | Oryza sativa |
transcript | LOC_Os01g73120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCG GGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGEST: gi|29668921|gb|CB665196.1|CB665196
genomic: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccaca ... tgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
EST: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCG GGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGEST: gi|218503174|gb|FG945918.1|FG945918
genomic: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccaca ... tgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
EST: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCT-G GGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGEST: gi|29671028|gb|CB667303.1|CB667303
genomic: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccaca ... tgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
EST: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCG GGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
genomic: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccaca ... tgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
actacttgatgcactaagtttgcaaaatcatgtggattttttttttgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGGTGTCGTTGGGCTCGTCTTGTGCCATTACAAAAACTACTTCAGGCTAAA
acttgat putative branch site (score: 23)
ttttttttttgttttg putative PPT
attttttttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttgcttatatgttcaataagagggttgcaatgcttgtaatcactacttgatgcactaagtttgcaaaatcatgtggattttttttttgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGGTGTCGTTGGGCTCGTCTTGTGCCATTACAAAAACTACTTCAGGCTAAA
- ttttgct
- - - - - - - - -caataaga
- - - - - - - - - - - - - ggttgca
- - - - - - - - - - - - - - - - -atgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgg