1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGGCGGTCACCATCTTCGTCGTGCTCATGCTCGTCACCCCGGCCATCCCGCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccacaaaccaaccctccctccccgccgcaaacctagggcggaccttcccttgcggccgccatagctcgccgtccgcggtattgagctcccgtctc...
species | Oryza sativa |
transcript | LOC_Os01g73120.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCG GGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGEST: gi|29668921|gb|CB665196.1|CB665196
genomic: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccaca ... tgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
EST: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCG GGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGEST: gi|218503174|gb|FG945918.1|FG945918
genomic: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccaca ... tgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
EST: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCT-G GGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGEST: gi|29671028|gb|CB667303.1|CB667303
genomic: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccaca ... tgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
EST: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCG GGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
genomic: GCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccaca ... tgttttgcagGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCGGTCACCATCTTCGTCGTGCTCATGCTCGTCACCCCGGCCATCCCGCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGgtatgccacaaaccaaccctccctccccgccgcaaacctagggcggaccttcccttgcggccgccatagctcgccgtccgcggtattgagctcccgtctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgccgtc