Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattttgcttatggacataagaacccactttttctgtatttactagtttcatttaggtccgttcccgtaaaataaatttcaccatatgtatgacttcttaccacacttttttgcccccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCGTGCCAAAGTAAAACTGTCAAAACTATTATTCTTTGGTGATGAAGGAACC

Basic information

species Oryza sativa
transcript LOC_Os01g64650.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87005252|gb|CI283475.1|CI283475
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88383056|gb|CI538084.1|CI538084
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|89197611|gb|CI012392.1|CI012392
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86528025|gb|CI168231.1|CI168231
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88284806|gb|CI406252.1|CI406252
EST:     TACTATACTGTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86601691|gb|CI256196.1|CI256196
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86884514|gb|CI337082.1|CI337082
EST:     CTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: CTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88230905|gb|CI228810.1|CI228810
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86484196|gb|CI126829.1|CI126829
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86424480|gb|CI063241.1|CI063241
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88536917|gb|CI464718.1|CI464718
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88212458|gb|CI212098.1|CI212098
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|12622555|gb|AU172768.1|AU172768
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|89190592|gb|CI392445.1|CI392445
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|7212678|gb|AU082981.1|AU082981
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88223810|gb|CI223659.1|CI223659
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86542193|gb|CI182399.1|CI182399
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88473824|gb|CI411095.1|CI411095
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88967922|gb|CI098164.1|CI098164
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88237358|gb|CI237207.1|CI237207
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|38468730|gb|CF952861.1|CF952861
EST:     TACTATACTCTGAAGTTNGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|89197637|gb|CI012418.1|CI012418
EST:     TACTATACTCTGAAGTTNGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88243877|gb|CI242999.1|CI242999
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|89189985|gb|CI013552.1|CI013552
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86433718|gb|CI094061.1|CI094061
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88417783|gb|CI535942.1|CI535942
EST:     TACTATACTGTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88850406|gb|CI093087.1|CI093087
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|218479888|gb|FG958307.1|FG958307
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGC
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGC
EST: gi|89173420|gb|CI041313.1|CI041313
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88962198|gb|CI097351.1|CI097351
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88838962|gb|CI012838.1|CI012838
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88517404|gb|CI445058.1|CI445058
EST:     TACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|5002729|gb|AU067838.1|AU067838
EST:     TACTATNCTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86542477|gb|CI182683.1|CI182683
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86542475|gb|CI182681.1|CI182681
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86541854|gb|CI182060.1|CI182060
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86541898|gb|CI182104.1|CI182104
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88252245|gb|CI350673.1|CI350673
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|89162677|gb|CI099369.1|CI099369
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88237346|gb|CI237195.1|CI237195
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86887429|gb|CI313332.1|CI313332
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88274492|gb|CI394898.1|CI394898
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86542456|gb|CI182662.1|CI182662
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88844006|gb|CI008587.1|CI008587
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88963812|gb|CI031145.1|CI031145
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88256282|gb|CI358670.1|CI358670
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88985416|gb|CI002933.1|CI002933
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88975339|gb|CI023590.1|CI023590
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         ATGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86507385|gb|CI150018.1|CI150018
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88548153|gb|CI477071.1|CI477071
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88850613|gb|CI094878.1|CI094878
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88833199|gb|CI076682.1|CI076682
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88847504|gb|CI015997.1|CI015997
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88209464|gb|CI209313.1|CI209313
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|87032970|gb|CI187594.1|CI187594
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|89190545|gb|CI392398.1|CI392398
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTGTACACTAAGATCAATTGCCGTGAATCT
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88508722|gb|CI436228.1|CI436228
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88240976|gb|CI240825.1|CI240825
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86416630|gb|CI030641.1|CI030641
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|38475736|gb|CF959869.1|CF959869
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTGCGACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|88239346|gb|CI240508.1|CI240508
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
EST: gi|86594435|gb|CI253334.1|CI253334
EST:     TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG                         AAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG
genomic: TACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 59 (downstream exon)
Score: 52

ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAGgttaattttg ... cccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCGTGCCAAAGTAAAACTGTCAAAACTATTATTCTTTGGTGATGAAGGAACC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataaatttcaccatatgtatgacttcttaccacacttttttgcccccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCGTGCCAAAGTAAAACTGTCAAAACTATTATTCTTTGGTGATGAAGGAACC
                        ttcttac  putative branch site (score: 52)
                       cttcttaccacacttt  CT-rich tract
             atatgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaattttgcttatggacataagaacccactttttctgtatttactagtttcatttaggtccgttcccgtaaaataaatttcaccatatgtatgacttcttaccacacttttttgcccccttttcagAAGCCGACCGATACTGTTTAGTTCTACAGTAAGATCAATTGCCGTGAATCGTGCCAAAGTAAAACTGTCAAAACTATTATTCTTTGGTGATGAAGGAACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA