1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catattatctactgttatgaattgatatctcataacttatttttcatatgggtaaaactgcttgctgatgtgcattgtttatgttctaatatttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG
species | Oryza sativa |
transcript | LOC_Os01g64650.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATTAAAACNTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTEST: gi|89197611|gb|CI012392.1|CI012392
genomic: AAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCA-TAAAAC-TATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCT
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACCAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|86601691|gb|CI256196.1|CI256196
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|218482998|gb|FG956126.1|FG956126
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88230905|gb|CI228810.1|CI228810
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|86484196|gb|CI126829.1|CI126829
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: TGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|86424480|gb|CI063241.1|CI063241
genomic: TGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: AGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88212458|gb|CI212098.1|CI212098
genomic: AGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88967922|gb|CI098164.1|CI098164
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATNGGATAGCTTGEST: gi|88237358|gb|CI237207.1|CI237207
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: AAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|38468730|gb|CF952861.1|CF952861
genomic: AAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88243877|gb|CI242999.1|CI242999
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|89189985|gb|CI013552.1|CI013552
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|218479888|gb|FG958307.1|FG958307
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88962198|gb|CI097351.1|CI097351
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88838962|gb|CI012838.1|CI012838
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACCAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|86541854|gb|CI182060.1|CI182060
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|86541898|gb|CI182104.1|CI182104
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88252245|gb|CI350673.1|CI350673
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: GACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88237346|gb|CI237195.1|CI237195
genomic: GACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88274492|gb|CI394898.1|CI394898
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|86542456|gb|CI182662.1|CI182662
genomic: ACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: TAATGAAAATCCAGAGGGACTTGGATGAAACCAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88844006|gb|CI008587.1|CI008587
genomic: TAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88963812|gb|CI031145.1|CI031145
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: GTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88985416|gb|CI002933.1|CI002933
genomic: GTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACTAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88975339|gb|CI023590.1|CI023590
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: AGAGGGACTTGGATGAAACAAAAATTACCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|86507385|gb|CI150018.1|CI150018
genomic: AGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: AAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88850613|gb|CI094878.1|CI094878
genomic: AAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATNGGATAGCTTGEST: gi|88833199|gb|CI076682.1|CI076682
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88847504|gb|CI015997.1|CI015997
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|88240976|gb|CI240825.1|CI240825
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: AAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGGGGGGAAAGATTGGATAGCTTGEST: gi|86416630|gb|CI030641.1|CI030641
genomic: AAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGEST: gi|86594435|gb|CI253334.1|CI253334
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
EST: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
genomic: ACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtattt ... atttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTG
atatgggtaaaactgcttgctgatgtgcattgtttatgttctaatatttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG
ttctaat putative branch site (score: 82)
attgtttatgttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catattatctactgttatgaattgatatctcataacttatttttcatatgggtaaaactgcttgctgatgtgcattgtttatgttctaatatttgaacagCATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -tactgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt