Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggaccctttttaacttacattttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG

Basic information

species Oryza sativa
transcript LOC_Os01g64650.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64650.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G178244_T01 (Zea mays), 3'ss of exon 5
----ggaccctttttaacttaca---ttttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGG-ACTT---TCCTGTCCTTAAGATGAAGACTCCAG
     ||  ||  ||    | ||   |  ||||| | |  || | |   ||   |  |  |||| |    |   ||  ||||  || ||       || |||| |||||||||||||||||||||||||| ||||||||||| || || ||||| | || |||||  |||   || |||    |||             
ttaaagattctgattgctcttcaggttactttgtgtttataggtatgcattatctcacacttgtgtattca-cattcctgagaaatgtt------tttgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG-------------

upper sequence: LOC_Os01g64650.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G387076_T02 (Zea mays), 3'ss of exon 6
----ggaccctttttaacttacattttttgtttgttaagttttatcttgattaccgtttgtctcca-gaattt-tgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG
    ||   || || | ||||   |||| | ||  ||||| |   | | ||  | ||||||    | | |||    |  | |   | |||| |||| | ||| |||||||||||||||||||||||||| |||||||||||||| || ||||| | || ||||| || | |  || |       |         
ttctgggtgctcttcagctta---ttttgggttcataagtatg--cattatctcagtttgttcttatgtattcacatccatgaggaatgttattctgt-ctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGCTGCACAATACTGTAAATTTTGG-CTCTTCACTCATGGTTGCAAG--------

upper sequence: LOC_Os01g64650.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv11s0206g00130.t01 (Vitis vinifera), 3'ss of exon 5
---ggaccctttttaacttacattttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGT--CCTTAAGATGAAGACTCCAG----------
      |  |  | |  || | |||     |   |||  || | | ||    | |  |||     |  |  |    |  | |   | |  |  ||    | ||||||||||||||||||| |||||||| || || ||||||| |||| | | |  |||  |       |   |  ||   | | | | |             
agatagcagtagtaaggttccttttagaaatctctaaacttaagcgtgggc-ctgaatgttgtttgc-taataccaaaagctgacggtggtggttgaaac-agATGTTCTACAAGCAGGCGAAGAAAACCAATCAGTGCTGTAGTATATTGTAAGCTTTCAAAAGCAAAGGTGCTCTACTGTAATGGCCCTCACATCACGTGT

upper sequence: LOC_Os01g64650.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv14s0060g00090.t01 (Vitis vinifera), 3'ss of exon 5
---ggaccctttttaacttacattt-tttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagg-gatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTT--GGACTTTCCTGTCCTTAAGA---TGAAGACTCCAG-------
    | | |    || |  | |  |  || | |||| |  |   | | || |   |    ||||     |     |||   |||| ||     |  |     ||||||||||||| |||||||| |||||| ||||| ||||| || ||| | |     |   |||      ||     ||     ||     ||  |       
cccaggcacacactagcacagaagtacttatctgttgacataggtatagaat-ttgaacttctctgctgtcagactgacctgatagtgg----cgctggaagcagATGTTCTACAGGCAGGCAAGGAAAACCAACCAGTGCTGCACCATATTATAGGTCTCCAGGAGGAGGATGAGAGCAAAGGTTTGGCAGTTCATGGAGGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87005252|gb|CI283475.1|CI283475
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|89197611|gb|CI012392.1|CI012392
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86528025|gb|CI168231.1|CI168231
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACTAACCATATGCTGTACTATACTCTG
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCA-ATGCTGTACTATACTCTG
EST: gi|88284806|gb|CI406252.1|CI406252
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTGTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86601691|gb|CI256196.1|CI256196
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|218482998|gb|FG956126.1|FG956126
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88230905|gb|CI228810.1|CI228810
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86484196|gb|CI126829.1|CI126829
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86424480|gb|CI063241.1|CI063241
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88536917|gb|CI464718.1|CI464718
EST:     GGTTGAGAAGAGTTCAGACCTGAGTGGTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88212458|gb|CI212098.1|CI212098
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|89190592|gb|CI392445.1|CI392445
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|7212678|gb|AU082981.1|AU082981
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGNCCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88223810|gb|CI223659.1|CI223659
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86542193|gb|CI182399.1|CI182399
EST:     GATTGGATAGCTTGGCTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88473824|gb|CI411095.1|CI411095
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88967922|gb|CI098164.1|CI098164
EST:     GATNGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88237358|gb|CI237207.1|CI237207
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|38468730|gb|CF952861.1|CF952861
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|89197637|gb|CI012418.1|CI012418
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGGCTGTACTATACTCTG
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAAT-GCTGTACTATACTCTG
EST: gi|88243877|gb|CI242999.1|CI242999
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|89189985|gb|CI013552.1|CI013552
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86433718|gb|CI094061.1|CI094061
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88417783|gb|CI535942.1|CI535942
EST:     TGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTGTGA
genomic: TGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88850406|gb|CI093087.1|CI093087
EST:     GATCGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|218479888|gb|FG958307.1|FG958307
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|89173420|gb|CI041313.1|CI041313
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88962198|gb|CI097351.1|CI097351
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88838962|gb|CI012838.1|CI012838
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|5002729|gb|AU067838.1|AU067838
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGNCCTGAGTGCTGCTTCACAG                         NTGTTCTACAAGCAGGCAAAGAAAACAANCCAATGCTGTACTATNCTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86542477|gb|CI182683.1|CI182683
EST:     GAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86542475|gb|CI182681.1|CI182681
EST:     GAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCTATGCTGTACTATACTCTGA
genomic: GAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86541854|gb|CI182060.1|CI182060
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86541898|gb|CI182104.1|CI182104
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88252245|gb|CI350673.1|CI350673
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88237346|gb|CI237195.1|CI237195
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86887429|gb|CI313332.1|CI313332
EST:     AGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: AGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88274492|gb|CI394898.1|CI394898
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86542456|gb|CI182662.1|CI182662
EST:     GATTGGATAGCTTGGCTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88844006|gb|CI008587.1|CI008587
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88963812|gb|CI031145.1|CI031145
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88256282|gb|CI358670.1|CI358670
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88985416|gb|CI002933.1|CI002933
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88975339|gb|CI023590.1|CI023590
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86507385|gb|CI150018.1|CI150018
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88548153|gb|CI477071.1|CI477071
EST:     GATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88850613|gb|CI094878.1|CI094878
EST:     GATNGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88833199|gb|CI076682.1|CI076682
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGCGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88847504|gb|CI015997.1|CI015997
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88209464|gb|CI209313.1|CI209313
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|87032970|gb|CI187594.1|CI187594
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|89190545|gb|CI392398.1|CI392398
EST:     ATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAGGACAAACCAATGCTGTACTATACTCTGA
genomic: ATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGA-GTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88508722|gb|CI436228.1|CI436228
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88240976|gb|CI240825.1|CI240825
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86416630|gb|CI030641.1|CI030641
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|38475736|gb|CF959869.1|CF959869
EST:     GATTGGATAGGGGGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|88239346|gb|CI240508.1|CI240508
EST:     CTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: CTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
EST: gi|86594435|gb|CI253334.1|CI253334
EST:     GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAG                         ATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA
genomic: GATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 74 (downstream exon)
Score: 52

CATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCTTCACAGgtaatcatgt ... tttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG
 tcttgat  putative branch site (score: 52)
                                 tattgtttttcttttc  putative PPT
                                atattgtttttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggaccctttttaacttacattttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGGACTTTCCTGTCCTTAAGATGAAGACTCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - -cttacat
- - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga