1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgaccctttgatctgctagagtaagtttcatgatgcaacacatcagtagttaagaattatcctaattatccagttattgatagaattcattttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACAAAAGATGCAACAGATGCTGCCCAACAGTGGCCTTTCTTGACAGATGCTT
species | Oryza sativa |
transcript | LOC_Os01g64650.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTGAATAAG GTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACAEST: gi|218482998|gb|FG956126.1|FG956126
genomic: TTCTGAATAAGgtatgagcct ... ttttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACA
EST: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAG GTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACAEST: gi|4879970|gb|AU064269.1|AU064269
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGgtatgagcct ... ttttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACA
EST: TATGGATGATCACTATCCTGTACGA-GTGCAATTTTCTCTTCTGAATAAG GTACTTGACGAATACCAGAAGGTTTTCGGGGACTEST: gi|38468730|gb|CF952861.1|CF952861
genomic: TATGGATGATCACTATCCTGTACGAAGTGCA-TTTTCTCTTCTGAATAAGgtatgagcct ... ttttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACT
EST: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAG GTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACAEST: gi|88243877|gb|CI242999.1|CI242999
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGgtatgagcct ... ttttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACA
EST: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAG GTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACAEST: gi|218479888|gb|FG958307.1|FG958307
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGgtatgagcct ... ttttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACA
EST: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAG GTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACAEST: gi|27578119|gb|CB000814.1|CB000814
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGgtatgagcct ... ttttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACA
EST: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAG GTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACA
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGgtatgagcct ... ttttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACA
agtagttaagaattatcctaattatccagttattgatagaattcattttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACAAAAGATGCAACAGATGCTGCCCAACAGTGGCCTTTCTTGACAGATGCTT
ttcatttt CT-rich tract
ttattgatagaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaccctttgatctgctagagtaagtttcatgatgcaacacatcagtagttaagaattatcctaattatccagttattgatagaattcattttatgaagGTACTTGACGAATACCAGAAGGCTTTCGGGGACTCTTGGAAAGCTGCTACAAAAGATGCAACAGATGCTGCCCAACAGTGGCCTTTCTTGACAGATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - -ctgctag
- - - - - - - - - - - - - - - -tgatgca