1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgttacattcctcattttacgtgacagtaaacatgacctgcttacttttatttgatgtattttagttactgtaacatctccagaagaaactgaacagttcttgtctataaatagGACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCTAGCATTCGCTCTGCCGGTGCGAAGGTCCGGTCAGCTCGAATGTCTGATC
species | Oryza sativa |
transcript | LOC_Os01g60309.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATCAAGGAAGTCACTTGACATGGCAATCAGGCATATG GACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCTEST: gi|116875220|gb|EC365728.1|EC365728
genomic: TATCAAGGAAGTCACTTGACATGGCAATCAAGCATATGgtatgttaca ... ctataaatagGACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCT
EST: TTGGTAGGACAATATCAAGGAAGTCACTTGACATGGCAATCAGGCATATG GACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCTEST: gi|33676663|gb|CF304902.1|CF304902
genomic: TTGGTAGGACAATATCAAGGAAGTCACTTGACATGGCAATCAAGCATATGgtatgttaca ... ctataaatagGACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCT
EST: TTGGTAGGACAATATCAAGGAAGTCACTTGACATGGCAATCAAGCATATG GACATTCGACAAAACCTEST: gi|218490217|gb|FG960809.1|FG960809
genomic: TTGGTAGGACAATATCAAGGAAGTCACTTGACATGGCAATCAAGCATATGgtatgttaca ... ctataaatagGACATTCGACAAAACCT
EST: TTGGTAGGACAATATCAAGGAAGTCACTTGACATGGCAATCAGGCATATG GACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCTEST: gi|218486319|gb|FG948096.1|FG948096
genomic: TTGGTAGGACAATATCAAGGAAGTCACTTGACATGGCAATCAAGCATATGgtatgttaca ... ctataaatagGACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCT
EST: TTGGTAGGACAATATCAAGGAAGTCACTTGACATGGCAATCAGGCATATG GACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCT
genomic: TTGGTAGGACAATATCAAGGAAGTCACTTGACATGGCAATCAAGCATATGgtatgttaca ... ctataaatagGACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCT
ttttagttactgtaacatctccagaagaaactgaacagttcttgtctataaatagGACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCTAGCATTCGCTCTGCCGGTGCGAAGGTCCGGTCAGCTCGAATGTCTGATC
ctgtaac putative branch site (score: 12)
ttcttgtct putative PPT
tctataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttacattcctcattttacgtgacagtaaacatgacctgcttacttttatttgatgtattttagttactgtaacatctccagaagaaactgaacagttcttgtctataaatagGACATTCGACAAAACCTGGGTGGTATTCGTGGTGCATCTCTATTCCCGCCTAGCATTCGCTCTGCCGGTGCGAAGGTCCGGTCAGCTCGAATGTCTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC