1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cctttccattatttatgtgtcatctgttctatgaccaagttatctaatttttattggtctgatcttctatgacttgcataacattggaatatttcttcagGCTTCTGACTCCCCCAGGATCACCTCATGCTCCTATACTGGAGGTTGTGGAGAAAGCTCCATCCTCAGATGTCCCTAAACGCATTACTACTAGATCATCC
species | Oryza sativa |
transcript | LOC_Os01g60309.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGATGGAGGACTTGCTGGACACGGAGATCGGGAAGCATGACTACGACTG GCTTCTGACTCCCCCAGGATCACCTCATGCTCCTATACTGGAGGTTGTGGAEST: gi|29620846|gb|CB625857.1|CB625857
genomic: GAGATGGAGGACTTGCTGGACACGGAGATCGGGAAGCATGACTACGACTGgtaattgact ... atttcttcagGCTTCTGACTCCCCCAGGATCACCTCATGCTCCTATACTGGAGGTTGTGGA
EST: GAGATGGAGGACTTGCTGGACACGGAGATCGGGAAGCATGACTACGACTG GCTTCTGACTCCCCCAGGATCACCTCATGCTCCTATACTGGAGGTTGTGGA
genomic: GAGATGGAGGACTTGCTGGACACGGAGATCGGGAAGCATGACTACGACTGgtaattgact ... atttcttcagGCTTCTGACTCCCCCAGGATCACCTCATGCTCCTATACTGGAGGTTGTGGA
aatttttattggtctgatcttctatgacttgcataacattggaatatttcttcagGCTTCTGACTCCCCCAGGATCACCTCATGCTCCTATACTGGAGGTTGTGGAGAAAGCTCCATCCTCAGATGTCCCTAAACGCATTACTACTAGATCATCC
gcataac putative branch site (score: 3)
tatttcttc putative PPT
aatatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttccattatttatgtgtcatctgttctatgaccaagttatctaatttttattggtctgatcttctatgacttgcataacattggaatatttcttcagGCTTCTGACTCCCCCAGGATCACCTCATGCTCCTATACTGGAGGTTGTGGAGAAAGCTCCATCCTCAGATGTCCCTAAACGCATTACTACTAGATCATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - catctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgca