1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagggagggtaggagcaagagcaacagagtgatgtcgagttcgggtggcttgcggttgttatcggtctcatccggttttgcggttgcagGCATCGTCGTATCGCATCGATCTGGTTTGGGGGGTTTTGGGAGTCTGAAGTGGTGGGTTTGAGATGGAGGACTTGCTGGACACGGAGATCGGGAAGCATG
species | Oryza sativa |
transcript | LOC_Os01g60309.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGATTCCCATCCCCTCTCGCGGCGCGCCGCTTCGACGGGAG GCATCGTCGTATCGCATCGATCTGGTTTGGGGGGTTTTGGGAGTCTGAAGTEST: gi|29620846|gb|CB625857.1|CB625857
genomic: GGGATTCCCATCCCCTCTCGCGGCGCGCCGCTTCGACGGGAGgtagggaggg ... gcggttgcagGCATCGTCGTATCGCATCGATCTGGTTTGGGGGGTTTTGGGAGTCTGAAGT
EST: GGGATTCCCATCCCCTCTCGCGGCGCGCCGCTTCGACGGGAG GCATCGTCGTATCGCATCGATCTGGTTTGGGGGGTTTTGGGAGTCTGAAGT
genomic: GGGATTCCCATCCCCTCTCGCGGCGCGCCGCTTCGACGGGAGgtagggaggg ... gcggttgcagGCATCGTCGTATCGCATCGATCTGGTTTGGGGGGTTTTGGGAGTCTGAAGT
tcgagttcgggtggcttgcggttgttatcggtctcatccggttttgcggttgcagGCATCGTCGTATCGCATCGATCTGGTTTGGGGGGTTTTGGGAGTCTGAAGTGGTGGGTTTGAGATGGAGGACTTGCTGGACACGGAGATCGGGAAGCATG
ttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggagggtaggagcaagagcaacagagtgatgtcgagttcgggtggcttgcggttgttatcggtctcatccggttttgcggttgcagGCATCGTCGTATCGCATCGATCTGGTTTGGGGGGTTTTGGGAGTCTGAAGTGGTGGGTTTGAGATGGAGGACTTGCTGGACACGGAGATCGGGAAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC