1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctttagctgtatgacctgtttcttcaaatctactatttgctcagccaggcatgtgttgatgctcataattaacagaaatgtgctgcatgtttattgcagCTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTAGGCCAGCACGGAGTAACTCTGTCTCTCGCCCTTCAATCCAATCTACTCTTATTT
species | Oryza sativa |
transcript | LOC_Os01g60309.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCCTAAACGCATTACTACTAGATCATCCTCAACCACTAGAGCATCAAGG CTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTAGGCCAEST: gi|58694528|gb|CK083215.1|CK083215
genomic: TCCCTAAACGCATTACTACTAGATCATCCTCAACCACTAGAGCATCAAGGgttggtgcta ... tttattgcagCTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTAGGCCA
EST: CCCCTAAACGCATTACTACTAGATCATCCTCAACCACTAGAGCATCAAGG CTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTAGGCCAEST: gi|29620846|gb|CB625857.1|CB625857
genomic: TCCCTAAACGCATTACTACTAGATCATCCTCAACCACTAGAGCATCAAGGgttggtgcta ... tttattgcagCTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTAGGCCA
EST: CCCCTAAACGCATTACTACTATATCATCCTCAACCACTAGAGCATCAAGG CTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTATGCCA
genomic: TCCCTAAACGCATTACTACTAGATCATCCTCAACCACTAGAGCATCAAGGgttggtgcta ... tttattgcagCTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTAGGCCA
ccaggcatgtgttgatgctcataattaacagaaatgtgctgcatgtttattgcagCTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTAGGCCAGCACGGAGTAACTCTGTCTCTCGCCCTTCAATCCAATCTACTCTTATTT
aattaac putative branch site (score: 7)
ataattaacagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttagctgtatgacctgtttcttcaaatctactatttgctcagccaggcatgtgttgatgctcataattaacagaaatgtgctgcatgtttattgcagCTTTCCATTCCTGAAACAGAGAATGGGCATTCCACAGTACCAACTAGGCCAGCACGGAGTAACTCTGTCTCTCGCCCTTCAATCCAATCTACTCTTATTT
- - - -ctgtatg
- - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - ggcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgca