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gtgagagcttttatctattaaaagatgttgcagcttagtgaagtttgttcatttgtatcacaatgatcttattataatcaactcagatggttaataaataatgaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTG
species | Oryza sativa |
transcript | LOC_Os01g59920.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCG GTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTEST: gi|86911126|gb|CI317538.1|CI317538
genomic: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGgtgagagctt ... gaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
EST: AAAGACCTGAAAATGCTGGAAAATTGATGGCG GTTA-TTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCA-GTTATTCCGTEST: gi|86858932|gb|CI275139.1|CI275139
genomic: AAAGACCTGAAAATGCTGGAAAATTGATTGCGgtgagagctt ... gaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
EST: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCG GTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTEST: gi|88907378|gb|CI090172.1|CI090172
genomic: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGgtgagagctt ... gaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
EST: TAAAAGACCTGAAAATGCTGGAAAATTGATTGCG GTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTEST: gi|86823525|gb|CI256457.1|CI256457
genomic: TAAAAGACCTGAAAATGCTGGAAAATTGATTGCGgtgagagctt ... gaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
EST: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCG GTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTEST: gi|29683919|gb|CB680194.1|CB680194
genomic: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGgtgagagctt ... gaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
EST: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCG GTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTEST: gi|86597813|gb|CI276599.1|CI276599
genomic: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGgtgagagctt ... gaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
EST: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCG GTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTEST: gi|15852932|gb|BI805728.1|BI805728
genomic: CTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGgtgagagctt ... gaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
EST: ATGCTGGAAAATTGATT-CG GTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
genomic: ATGCTGGAAAATTGATTGCGgtgagagctt ... gaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGT
tcacaatgatcttattataatcaactcagatggttaataaataatgaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTG
ggttaat putative branch site (score: 3)
atggttaataaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagcttttatctattaaaagatgttgcagcttagtgaagtttgttcatttgtatcacaatgatcttattataatcaactcagatggttaataaataatgaatttgcagGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAACTAACTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA