1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caattggtttcctcaaccacagagatttccattaggttaatatcaatatatctttgttttaaattcacttatgtgtttggcactgccctttaattatcagGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTG
species | Oryza sativa |
transcript | LOC_Os01g59920.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAG GTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTEST: gi|58689817|gb|CK078504.1|CK078504
genomic: CCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGgtccgtactc ... taattatcagGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCT
EST: CCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAG GTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTEST: gi|29683919|gb|CB680194.1|CB680194
genomic: CCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGgtccgtactc ... taattatcagGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCT
EST: GAAAATGATGAACAAAGATATTAAG GTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCT
genomic: GAAAATGATGAACAAAGATATTAAGgtccgtactc ... taattatcagGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCT
atatatctttgttttaaattcacttatgtgtttggcactgccctttaattatcagGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTG
ctttaat putative branch site (score: 3)
ctgcccttt CT-rich tract
ttttaaattcacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattggtttcctcaaccacagagatttccattaggttaatatcaatatatctttgttttaaattcacttatgtgtttggcactgccctttaattatcagGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - aaccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccctt