1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGgtgagctgctgcacattaaaccctgttattttcagctactttatcagattattgtcgccgattatttgctacaggcctctaaaaatacgttctctaaaaa...
species | Oryza sativa |
transcript | LOC_Os01g59920.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTG GTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAEST: gi|86858932|gb|CI275139.1|CI275139
genomic: CAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGgtgagctgct ... tattttacagGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAA
EST: GGGAACTTGCACTAAAAGAGGGCCTGCTG GTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAEST: gi|86823525|gb|CI256457.1|CI256457
genomic: GGGAACTTGCACTAAAAGAGGGCCTGCTGgtgagctgct ... tattttacagGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAA
EST: CAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTG GTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAEST: gi|29683919|gb|CB680194.1|CB680194
genomic: CAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGgtgagctgct ... tattttacagGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAA
EST: CAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTG GTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAEST: gi|86597813|gb|CI276599.1|CI276599
genomic: CAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGgtgagctgct ... tattttacagGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAA
EST: CAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTG GTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAA
genomic: CAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGgtgagctgct ... tattttacagGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGgtgagctgctgcacattaaaccctgttattttcagctactttatcagattattgtcgccgattatttgctacaggcctctaaaaatacgttctctaaaaa
- - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata