1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGgtaagttcaataaccccattccaatttagcaatcaacatatttgggaattgagcatattaagagtatattccttggcattgacatccttttggttgatgtcaattaaaacag
species | Oryza sativa |
transcript | LOC_Os01g59920.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTGAAACTAGTGTAATCTCTGGTGATAATGCTG GTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGEST: gi|29683918|gb|CB680193.1|CB680193
genomic: GCTGAAACTAGTGTAATCTCTGGTGATAATGCTGgtaagttcaa ... attaaaacagGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAG
EST: TATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTG GTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGEST: gi|58689817|gb|CK078504.1|CK078504
genomic: TATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGgtaagttcaa ... attaaaacagGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATG
EST: TATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTG GTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGEST: gi|29683919|gb|CB680194.1|CB680194
genomic: TATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGgtaagttcaa ... attaaaacagGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAG
EST: TATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTG GTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAG
genomic: TATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGgtaagttcaa ... attaaaacagGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGgtaagttcaataaccccattccaatttagcaatcaacatatttgggaattgagcatattaagagtatattccttggcattgacatccttttggttgatgtcaattaaaacag
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG