1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtgatcaaagtcacctttctattccttttcacttattcaggagtacatcgtttacatgttcatgtcactctccaaattttgttgtgtgagtagTACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCATGGGTGATCTTCATTGG
species | Oryza sativa |
transcript | LOC_Os01g58640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAA TACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCAEST: gi|58593137|gb|CF991445.1|CF991445
genomic: ACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAAgtaagtgatc ... gtgtgagtagTACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCA
EST: GTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAA TACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCAEST: gi|66915919|gb|CX102767.1|CX102767
genomic: GTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAAgtaagtgatc ... gtgtgagtagTACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCA
EST: ACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAA TACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCAEST: gi|29668284|gb|CB664559.1|CB664559
genomic: ACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAAgtaagtgatc ... gtgtgagtagTACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCA
EST: ACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAA TACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCA
genomic: ACTTCGTTGTGATGTCCACCGAGCACGAGTGGTCAGAGAAGTCAGACCAAgtaagtgatc ... gtgtgagtagTACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCA
aggagtacatcgtttacatgttcatgtcactctccaaattttgttgtgtgagtagTACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCATGGGTGATCTTCATTGG
aaattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgatcaaagtcacctttctattccttttcacttattcaggagtacatcgtttacatgttcatgtcactctccaaattttgttgtgtgagtagTACAATTGGATGGAAATGGATTTGTCATCGGTTGATAGATCAAGAACACCATGGGTGATCTTCATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC