1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tggaatgattgatttttttttaaaaaaatgctactatctgagtaagcaatggtgcatggctgcatctcaagtctgaacaactgttactctcttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAA
species | Oryza sativa |
transcript | LOC_Os01g58640.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGGTTCAG TTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGEST: gi|58593137|gb|CF991445.1|CF991445
genomic: ATGTTGGTTCAGgtcagtccac ... cttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAG
EST: AGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAG TTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGEST: gi|87015622|gb|CI277580.1|CI277580
genomic: AGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGgtcagtccac ... cttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAG
EST: AGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAG TTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGEST: gi|66915919|gb|CX102767.1|CX102767
genomic: AGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGgtcagtccac ... cttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAG
EST: AGTTTGGATATGCCAGTGTACATGCGACGAAAACTGATATGTTGGTTCAG TTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGEST: gi|88661254|gb|CI450562.1|CI450562
genomic: AGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGgtcagtccac ... cttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAG
EST: TGATATGTTGGTTCAG TTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGEST: gi|29668284|gb|CB664559.1|CB664559
genomic: TGATATGTTGGTTCAGgtcagtccac ... cttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAG
EST: AGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAG TTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAG
genomic: AGTTTGGATATGCCAGGGTACATGCGACGAAAACTGATATGTTGGTTCAGgtcagtccac ... cttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAG
gcaatggtgcatggctgcatctcaagtctgaacaactgttactctcttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAA
ctgttactctcttttt CT-rich tract
tctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaatgattgatttttttttaaaaaaatgctactatctgagtaagcaatggtgcatggctgcatctcaagtctgaacaactgttactctcttttttcagTTTGTAAACTCGAACACGTCGGCAGTCCAGGACCAATTTAGGATTGTGAAGGGAGCCAGATGATCCAACCTTACAAGCAACTTGATATTCACAAGGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - atgattg
- - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaac