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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCCACGGGCTTCCTTGTCGAATGGGATTTCTTCCTTCACCTCATCACGCCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAGgtgattcctgcacccagaacactgtgcatattctaggtgtggatgacaatgagctgatgatgctttcatcag

Basic information

species Oryza sativa
transcript LOC_Os01g58640.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g58640.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G138756_T02 (Zea mays), 5'ss of exon 7
ACGCCACGGGCTTCCTTGTCGAATGGGATTTCTTCCTTCACCTCATCACGCCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAGgtga-ttcctgcacccagaacactgtgcatattctagg-----tgtggatgacaatgagctgat--gatgctttcatcag----------------------------------------------
| ||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || || || || ||  |||||||||| || |||||||| ||||| |||||| || ||  |  || || | | |     ||| ||      | |   | | | |||  | |   | || | | |  |                                               
ATGCCACAGGATTCCTGGTCGAGTGGGACTTCTTCCTTCACCTCATCACGCCACTGGCCTCTCAAGTTCCCTACATGACAGCTATTGGTAATCACGAAAGgtgaatttctttattcaaaagaatctttcacttccagtgcaattttcagtaatagtgaatttacagggtgatataaataaatatacaatgcacaattgctatcatgaactgatgatggttccccag

upper sequence: LOC_Os01g58640.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G326625_T01 (Zea mays), 5'ss of exon 3
ACGCCACGGGCTTCCTTGTCGAATGGGATTTCTTCCTTCACCTCATCACGCCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAGgtga-ttcctgcacccagaacactgtgcatattctagg-----tgtggatgacaatgagctgat--gatgctttcatcag----------------------------------------------
| ||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || || || || ||  |||||||||| || |||||||| ||||| |||||| || ||  |  || || | | |     ||||||      | |   | | | |||  | |   | || | | |  |                                               
ATGCCACAGGATTCCTGGTCGAGTGGGACTTCTTCCTTCACCTCATCACGCCACTGGCCTCTCAAGTTCCCTACATGACAGCTATTGGTAATCACGAAAGgtgaatttctttattcaaaagaatctttcacttctagtgcaattttcagtaatagtgaatttacagggtgatataaataaatatataatgcacaattgctatcatgaactgatgatggttccccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681233|gb|CB677508.1|CB677508
EST:     CCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAG                         AGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTCAGGCGGCGA
genomic: CCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAGgtgattcctg ... ctttcatcagAGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTCAGGCGGCGA
EST: gi|4714991|gb|AU056108.1|AU056108
EST:     CCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAANCACGAGAG                         AGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTCAGGCGGCGA
genomic: CCGCTCGCGTCGCAGGTGTCCTACATGACCGCCATTGGTAACCACGAGAGgtgattcctg ... ctttcatcagAGACTATGCAGGATCTGGATCGGTATATCCGACGCCGGATTCAGGCGGCGA