1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtggggacgtcttttgttattgcattttgtccaagtgagagctattactctacagtcctacaaatgctaagctgcttcatgcaacgacatgattgtgcagGCTGTCAACGTTTTTAGTACCCTCACCACCGGGCGTCTTCCAATACAGAGTAAAAACCTGGGCCATTTTCTAGAAGCCGGGGATGACTGCATCACCAACT
species | Oryza sativa |
transcript | LOC_Os01g53710.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTCCGATCCATTAGGCCTAGAGTACTTTTGGCACCATCGCAGTGGCAG GGCTGTCAACGTTTTTTAGGTACCCCTCACCCACCCGGGCGTCTTCCAAATEST: gi|29640592|gb|CB645601.1|CB645601
genomic: ATGTCCGATCCATTAGGCCTAGAGTACTTTTGGCACCATCGCAGTGGCAGgtgtggggac ... gattgtgcagG-CTGTCAACGTTTTT-AG-TACCC-TCACC-ACC-GGGCGTCTTCCAA-T
EST: ATGTCCGATCCATTAGGCCTAGAGTACTTTTGGCACCATCGCAGTGGCAG GCTGTCAACGTTTTTAGTACCCTCACCACCGGGCGTCTTCCAATACAGAGT
genomic: ATGTCCGATCCATTAGGCCTAGAGTACTTTTGGCACCATCGCAGTGGCAGgtgtggggac ... gattgtgcagGCTGTCAACGTTTTTAGTACCCTCACCACCGGGCGTCTTCCAATACAGAGT
tactctacagtcctacaaatgctaagctgcttcatgcaacgacatgattgtgcagGCTGTCAACGTTTTTAGTACCCTCACCACCGGGCGTCTTCCAATACAGAGTAAAAACCTGGGCCATTTTCTAGAAGCCGGGGATGACTGCATCACCAACT
tacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggggacgtcttttgttattgcattttgtccaagtgagagctattactctacagtcctacaaatgctaagctgcttcatgcaacgacatgattgtgcagGCTGTCAACGTTTTTAGTACCCTCACCACCGGGCGTCTTCCAATACAGAGTAAAAACCTGGGCCATTTTCTAGAAGCCGGGGATGACTGCATCACCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC