1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGCGCCGGCGCCAGGGTGCTGTTCTACCCGACGCTGCTCTACAACGTGCTGCGCAACCGGTTCGAGGCGGAGTTCCGGTGGTGGGACCGAGTCGACCAGgtgggtttgccccctctttccttgcgtctgaattcgactcgcgtgattaaactctctacaagcctcgcgcgattataggcttcgcttttggtttactcgt...
species | Oryza sativa |
transcript | LOC_Os01g53710.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCGCAACCGGTTCGAGGCGGAGTTCCGGTGGTGGGACCGAGTCGACCAG TATATTTTGCTAGGTGCTGTTCCTTTCCCAAGTGATGTTCCACGTTTGAAGEST: gi|88394551|gb|CI605892.1|CI605892
genomic: TGCGCAACCGGTTCGAGGCGGAGTTCCGGTGGTGGGACCGAGTCGACCAGgtgggtttgc ... ccacccgcagTATATTTTGCTAGGTGCTGTTCCTTTCCCAAGTGATGTTCCACGTTTGAAG
EST: TGCGCAACCGGTTCGAGGCGGAGTTCCGGTGGTGGGACCGAGTCGACCAG TATATTTTGCTAGGTGCTGTTCCTTTCCCAAGTEST: gi|58657111|gb|CK045791.1|CK045791
genomic: TGCGCAACCGGTTCGAGGCGGAGTTCCGGTGGTGGGACCGAGTCGACCAGgtgggtttgc ... ccacccgcagTATATTTTGCTAGGTGCTGTTCCTTTCCCAAGT
EST: TGCGCAACCGGTTCGAGGCGGAGTTCCGGTGGTGGGACCGAGTCGACCAG TATATTTTGCTAGGTGCTGTTCCTTTCCCAAGTGATGTTCCACGTTTGAAG
genomic: TGCGCAACCGGTTCGAGGCGGAGTTCCGGTGGTGGGACCGAGTCGACCAGgtgggtttgc ... ccacccgcagTATATTTTGCTAGGTGCTGTTCCTTTCCCAAGTGATGTTCCACGTTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGCCGGCGCCAGGGTGCTGTTCTACCCGACGCTGCTCTACAACGTGCTGCGCAACCGGTTCGAGGCGGAGTTCCGGTGGTGGGACCGAGTCGACCAGgtgggtttgccccctctttccttgcgtctgaattcgactcgcgtgattaaactctctacaagcctcgcgcgattataggcttcgcttttggtttactcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcgcgc