1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAATGCATCAGAAGGTGGCATTACTTATGTTCACTGTAAAGCTGGAAGAGGGCGTAGCACGACTATTGTTTTGTGTTATCTGgtaggataaacaataattaaagcaactcaatattgtatatctttcgctccattttgctgatgacagattacttgtcttgcag
species | Oryza sativa |
transcript | LOC_Os01g53710.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGTAAAGCTGGAAGAGGGCGTAGCACGACTATTGTTTTGTGTTATCTG ATTAAATATCGGAGCATGAGTCCAGAAGCAGCATTAGATCATGTCCGATCCEST: gi|29640592|gb|CB645601.1|CB645601
genomic: ACTGTAAAGCTGGAAGAGGGCGTAGCACGACTATTGTTTTGTGTTATCTGgtaggataaa ... tgtcttgcagATTAAATATCGGAGCATGAGTCCAGAAGCAGCATTAGATCATGTCCGATCC
EST: ACTGTAAAGCTGGAAGAGGGCGTAGCACGACTATTGTTTTGTGTTATCTG ATTAAATATCGGAGCATGAGTCCAGAAGCAGCATTAGATCATGTCCGATCC
genomic: ACTGTAAAGCTGGAAGAGGGCGTAGCACGACTATTGTTTTGTGTTATCTGgtaggataaa ... tgtcttgcagATTAAATATCGGAGCATGAGTCCAGAAGCAGCATTAGATCATGTCCGATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATGCATCAGAAGGTGGCATTACTTATGTTCACTGTAAAGCTGGAAGAGGGCGTAGCACGACTATTGTTTTGTGTTATCTGgtaggataaacaataattaaagcaactcaatattgtatatctttcgctccattttgctgatgacagattacttgtcttgcag
- - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAGG